Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69800 435 / 6e-151 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) AT3G48530 169 / 6e-48 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G15330 49 / 4e-06 AtPV42a Cystathionine beta-synthase (CBS) protein (.1) AT1G80090 49 / 6e-06 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013265 [exp] 472 / 2e-165 AT1G69800 536 / 0.0 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10022458 [exp] 170 / 3e-48 AT3G48530 579 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10016763 [exp] 169 / 1e-47 AT3G48530 578 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10026352 [exp] 66 / 3e-11 AT3G48530 127 / 4e-32 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10042308 [exp] 65 / 3e-11 AT3G48530 125 / 1e-31 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10029432 [exp] 48 / 8e-06 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10004227 [exp] 47 / 2e-05 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1) Lus10037535 [exp] 45 / 0.0001 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1) Lus10011457 [exp] 44 / 0.0003 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053600 [exp] 468 / 7e-164 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Potri.012G097000 [exp] 170 / 2e-48 AT3G48530 572 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.015G094700 [exp] 167 / 3e-47 AT3G48530 627 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.009G118700 [exp] 92 / 4e-20 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.019G052650 [exp] 43 / 0.0003 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G087100 [exp] 43 / 0.0003 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10030788 pacid=23155358 polypeptide=Lus10030788 locus=Lus10030788.g ID=Lus10030788.BGIv1.0 annot-version=v1.0 ATGTCAGAAGCCAAAGGGGACAAAGAGGGTGCCAAAATCGCCAGCTATGATGCATATTTCGAAACGATACAGTCCAGGAAGAAACTGCCACATTCATTGC AGGAGACCTTAACTGCTGCATTCTCTAGGATCCCGGCCGCATCCTTTCCAAAAGTCCCCGGTGGCAAAGATACGACTGTGAGCCACGCGGTCAAGGTTCT GTCCGAATGCAACATCATGAGTGCACCTGTTAGGAACCCGGATGCAGGAGATAGCCCGGACTGGAAAGATAGATACCTCGGAATCATCGATTATGCAGCG ATCGTTCTCTGGGTGCTCGAAAGTGCAGAGCTTGCTGCGGTAGCTTTGTCTGCAAGTACTGCTACTGCTGCTGGCATAGGAGCGGGAGCTGTTGGTGCCA TTGGAGCGGTAGCATTGGGCGTAACGGGCCCCGCTGCAATTGCTGGCTTGACAGCAGCTGCGGTAGGTGCCGCTGTTGCTGGTGGTGTGGCAGCCGATCG AGGCATCGGTAAAGATGCCCCGACTGCAGTTGACAGCTTAGGCAATGACTTTTACTCATCCCGCTGTGCTCCCCTCCTCCCGGTTGCGACAGATGGCTCA ATGTTGAGTGTCTTACTTTTACTCTCGAAATATAGGCTGAGAAACGTGCCTGTGATTGAGCCTGGCAATCCAGACGTGAAAAACTTCATCACACAATCTG CAGTAGTTCAGGGCCTGGAAGGATGCAAGGGAAGGGACTGGTTTGATTGTATAGCTGCATGTCCCCTTTCAGATTTAGGACTTCCTTTTATGTCTGCTGA CAAGGTTATAAGCATACAGAGTGATGAATTCATCCTGGAAGCTTTCAAGCTGATGAGAGATAATGAAATCGGCGGGCTTCCTGTGGTGGAAGGGCCGAAA AAGAAGATTGTTGGAAATATAAGCATAAGGGACATAAGATTCTTGCTGCTGAAACGTGACCTATTCGACAATTTCAGGCAGCTGACTGTAAAGGATTTCA TGACGACCATCACAACTCACGAGAACGGCAAAGTAATGCCACCCATCACATGCAAGTTGGATGCAACTCTTGGCAGTGTGATTCACCATCTTGCTTCCAG ATCAGTCCACAGGCTCTATGTCGTCGATGATAGCCAAGATGAAGTAGTTATTGGTGTAATAACACTTCGAGACGTGATATCATGTTTCATATACGAGCCA CCAAACCATTTTGACATCTACTTTGGTTTCTCAATCAAAGAAGTCCTGAACAAGTGA
AA sequence Show only first row Show all	>Lus10030788 pacid=23155358 polypeptide=Lus10030788 locus=Lus10030788.g ID=Lus10030788.BGIv1.0 annot-version=v1.0 MSEAKGDKEGAKIASYDAYFETIQSRKKLPHSLQETLTAAFSRIPAASFPKVPGGKDTTVSHAVKVLSECNIMSAPVRNPDAGDSPDWKDRYLGIIDYAA IVLWVLESAELAAVALSASTATAAGIGAGAVGAIGAVALGVTGPAAIAGLTAAAVGAAVAGGVAADRGIGKDAPTAVDSLGNDFYSSRCAPLLPVATDGS MLSVLLLLSKYRLRNVPVIEPGNPDVKNFITQSAVVQGLEGCKGRDWFDCIAACPLSDLGLPFMSADKVISIQSDEFILEAFKLMRDNEIGGLPVVEGPK KKIVGNISIRDIRFLLLKRDLFDNFRQLTVKDFMTTITTHENGKVMPPITCKLDATLGSVIHHLASRSVHRLYVVDDSQDEVVIGVITLRDVISCFIYEP PNHFDIYFGFSIKEVLNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	0	1
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	1.7	0.8917
					Lus10020900 [exp]	2.4	0.8855
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	3.5	0.8644
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	3.7	0.8618
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10038808 [exp]	4.1	0.8221
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	4.5	0.8495
					Lus10014515 [exp]	5.5	0.8788
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	5.5	0.8669
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	5.7	0.8461
					Lus10033476 [exp]	6.6	0.8724

Compare expression of checked genes

Lus10030788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.