Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35280 51 / 9e-08 F-box family protein (.1) AT1G67623 52 / 1e-07 F-box family protein (.1) AT3G30430 42 / 5e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006434 [exp] 195 / 4e-61 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10037978 [exp] 80 / 2e-17 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 78 / 2e-16 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10022147 [exp] 67 / 2e-13 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10005844 [exp] 59 / 2e-10 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10030128 [exp] 52 / 1e-07 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10038720 [exp] 48 / 1e-06 ND 41 / 8e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 75 / 1e-15 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 65 / 3e-12 AT1G67623 102 / 6e-26 F-box family protein (.1) Potri.015G096200 [exp] 44 / 5e-05 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030790 pacid=23155321 polypeptide=Lus10030790 locus=Lus10030790.g ID=Lus10030790.BGIv1.0 annot-version=v1.0 ATGGGTTCCACAAATATCTCACATCCGCCATTCAAACGCAAACCAAACAACAAGAGACGAAGGAACATAACAACTCGTGACAATCCTAGACGTCGTCAAA TTAGCTTGACCAATCACCTCCCTCGCGATCTCCTAATCGAAATCCTATCCCACGTGGCCTCGAACTCCGTCACCGACCTCTTCAACGCCAAACAGACATG CAAGCTCATGTCCCAGTCCGGATCGCATCAATGCATCCTCCGAAACGCGGCCGTTTTGCACACCTTCCACGGCAGATTAGTACCCTGCGCGTTATCGGAC CATCGCGACGCTGATAAATACAGCAGCTTTGTGTCCGAATGCGTGGACAACGAAAATCCGGAGGCGTTGTTTCTCCGCGGGATTGAAGAGTGTTGCTTTA GTTCCGGAGTAGGGTTTCGAAACCTGAGATCTGCCGCGGAGAGGGGTTTGAAGGAAGCGAGGTACGCTTACGGGATCTTCAGCCTATTCGGCGGCGAAGA AGAAGGAAGAGGAGGAGAAGGTTTGAGGTTTTTACGAGGATTGAGGAAGAAGGAGGATGTGGTGGAATGCAGGGAGACGGTGAATTTCGCGATGTTGAAT TGCATGTGGGTTAATAGTATCTGTCGTGACCGTAGGGAGTTTAGAGGGTTGAGGTTAGAGGAAAAGAAGAAGAAGAAAACGACGAATTCTAAGTGTGGAT GCGACCGGAGAGGGAAAAGGTTGGGGTGTTACAGTAAAAATCCGGATTTCGAGTGGTACACGAAGAAGGAGCAAGTGATGGAACTTGTGGATAGTGGTCT TTGTAACTCTTGCTTTTGGGAGTTTGAGGCTTCTGTTTGTTGGAAGTTTGTTACGGAGATAGCTTGGTGGCGTAGTTAG
AA sequence Show only first row Show all	>Lus10030790 pacid=23155321 polypeptide=Lus10030790 locus=Lus10030790.g ID=Lus10030790.BGIv1.0 annot-version=v1.0 MGSTNISHPPFKRKPNNKRRRNITTRDNPRRRQISLTNHLPRDLLIEILSHVASNSVTDLFNAKQTCKLMSQSGSHQCILRNAAVLHTFHGRLVPCALSD HRDADKYSSFVSECVDNENPEALFLRGIEECCFSSGVGFRNLRSAAERGLKEARYAYGIFSLFGGEEEGRGGEGLRFLRGLRKKEDVVECRETVNFAMLN CMWVNSICRDRREFRGLRLEEKKKKKTTNSKCGCDRRGKRLGCYSKNPDFEWYTKKEQVMELVDSGLCNSCFWEFEASVCWKFVTEIAWWRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67623			F-box family protein (.1)		Lus10030790 [exp]	0	1
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	7.0	0.8960
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	7.1	0.8955
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	12.2	0.8927
					Lus10009804 [exp]	13.0	0.7922
					Lus10000801 [exp]	13.2	0.7316
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	14.1	0.8927
AT1G17930			Aminotransferase-like, plant m...		Lus10016922 [exp]	15.8	0.8927
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	17.3	0.8927
					Lus10021782 [exp]	18.7	0.8927
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	20.0	0.8927

Compare expression of checked genes

Lus10030790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.