Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15110 499 / 1e-175 Pectate lyase family protein (.1) AT1G14420 488 / 4e-171 AT59 Pectate lyase family protein (.1) AT3G01270 480 / 6e-168 Pectate lyase family protein (.1) AT2G02720 468 / 2e-163 Pectate lyase family protein (.1) AT3G07010 437 / 7e-152 Pectin lyase-like superfamily protein (.1) AT4G13710 437 / 3e-151 Pectin lyase-like superfamily protein (.1.2) AT1G67750 420 / 4e-145 Pectate lyase family protein (.1) AT1G04680 419 / 2e-144 Pectin lyase-like superfamily protein (.1) AT3G24670 419 / 3e-144 Pectin lyase-like superfamily protein (.1) AT5G63180 408 / 2e-140 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037207 [exp] 654 / 0 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10036721 [exp] 649 / 0 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 501 / 8e-177 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 489 / 1e-171 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 457 / 3e-159 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 456 / 4e-158 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10023679 [exp] 431 / 9e-149 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 429 / 2e-148 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 421 / 4e-145 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148800 [exp] 594 / 0 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 570 / 0 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.017G078400 [exp] 493 / 8e-173 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.004G124100 [exp] 484 / 1e-169 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.003G175900 [exp] 437 / 3e-151 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 431 / 5e-149 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 422 / 1e-145 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 417 / 2e-143 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 414 / 6e-143 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 413 / 6e-142 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase CL0268 [flax] [poplar] PF04431 [flax] [poplar] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Lus10030791 pacid=23155367 polypeptide=Lus10030791 locus=Lus10030791.g ID=Lus10030791.BGIv1.0 annot-version=v1.0 ATGGATTTCAGATTCACAAAGTTAGTATTTTTCATTGTCTTGATTGTGGCTCTAGTTCCCTATCTTGAAGCTCACATTGCTCATTTCGATGAGTATTGGC AACAACGAGCCGATGAGGCATCACGTGCCGCCCAGGAGACATACCATCCAGAACCTTTCAACGTAACAGAACACTTCAATACGCTGGTCGACACACATTT ATTCGGGTCCAATGATACCCGTCGGAGTATGATGAATCATAAGGGGAAATGTGAAGCCACCAACCCTATCGATAGTTGTTGGCGGTGTGATCCAAATGGG GAGAAAACCCGCCAGAGGCTTGCAGCCTGCGTTCAAGGTTTCGGGTTCAAGACCACGGGTGGAAAGGGCGGACGGATCTATGTCGTCACTGATGCCTCGG ATTGCGATATGGTGAACCCCAAACCCGGGACACTCCGGCACGCTGTGATCCAAAAGGGTCCGCTCTGGATCATTTTCGCTAGGAGCATGATCATAAGGTT AACCCAGGAGCTTATGGTTAGTTGTGACAAGACCATTGATGGAAGAGGAGCCAATGTCCACATTGCGAACGGAGGGGGGATCACGCTGCAGTTCGTTAAG AACGTGATCATACATGGCCTCCACATCCACGACATAGTTCCTAAGCCCGGTGGGATGATCCGGGACGCGGTGGATCACTATGGTCTCCGGACAAGGAGCG ACGGCGATGGAATCTCACTATATGGTGCAACCAACGTGTGGATCGACCACGTGTCGATGTCTAATTGTGCAGATGGAATCGTTGATGCCATCATGGAGTC CACCGGGATCACCATCTCCAACTGTCATATCACTGACCATAATGAGGTGATGCTGTTTGGGGCAAGTGGGAGCTACTCGAAAGACTCGGTCATGCAAATC ACGTTAGCGTTCAACCATTTCGGTCACGGTTTAGTCCAAAGGATGCCGAGGTGTCGATGGGGTTTCTTCCATGTCGTCAACAATGACTACACCCATTGGC TAATGTACGCCATGGGTGGTAGCAACCATCCCACGATCATTAGCCAAGGCAATCGCTTCATCGCTCCCCAGAATATCGCCGCCAAAGAGGTGACAAAACG AGAATATGCACAACCATCCGAGTGGAAGCATTGGGACTGGATATCACAAGGTGATTTGATGATGAATGGTGCATTCTTCGTTCCTTCGGGAAACCCTCAA GTCGTAAACAAAATCACAAAGCAACAACGAATCAATGAAAAGGCTGGAACACATGTTACCACGCTAAGTCGCTTCTCAGGTGCACTGAATTGTTGCGCCG GAAAGCCATGTTAG
AA sequence Show only first row Show all	>Lus10030791 pacid=23155367 polypeptide=Lus10030791 locus=Lus10030791.g ID=Lus10030791.BGIv1.0 annot-version=v1.0 MDFRFTKLVFFIVLIVALVPYLEAHIAHFDEYWQQRADEASRAAQETYHPEPFNVTEHFNTLVDTHLFGSNDTRRSMMNHKGKCEATNPIDSCWRCDPNG EKTRQRLAACVQGFGFKTTGGKGGRIYVVTDASDCDMVNPKPGTLRHAVIQKGPLWIIFARSMIIRLTQELMVSCDKTIDGRGANVHIANGGGITLQFVK NVIIHGLHIHDIVPKPGGMIRDAVDHYGLRTRSDGDGISLYGATNVWIDHVSMSNCADGIVDAIMESTGITISNCHITDHNEVMLFGASGSYSKDSVMQI TLAFNHFGHGLVQRMPRCRWGFFHVVNNDYTHWLMYAMGGSNHPTIISQGNRFIAPQNIAAKEVTKREYAQPSEWKHWDWISQGDLMMNGAFFVPSGNPQ VVNKITKQQRINEKAGTHVTTLSRFSGALNCCAGKPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	0	1
					Lus10029261 [exp]	2.6	0.9980
					Lus10001825 [exp]	3.6	0.9830
AT5G56990			unknown protein		Lus10029528 [exp]	3.7	0.9980
					Lus10003825 [exp]	4.6	0.9980
					Lus10038051 [exp]	5.3	0.9980
AT5G01660			unknown protein		Lus10040599 [exp]	5.9	0.9980
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	6.5	0.9980
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	7.0	0.9980
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	8.0	0.9924
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	8.3	0.9375

Compare expression of checked genes

Lus10030791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.