Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69830 1155 / 0 ATAMY3, AMY3 alpha-amylase-like 3 (.1) AT1G76130 404 / 8e-130 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) AT4G25000 345 / 7e-108 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1) AT1G27000 206 / 3e-59 Protein of unknown function (DUF1664) (.1) AT2G02730 173 / 3e-48 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G04960 160 / 5e-43 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 73 / 3e-13 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G24267 52 / 1e-06 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G44674 44 / 1e-05 Protein of unknown function (DUF1664) (.1) AT1G10760 46 / 0.0002 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013270 [exp] 1718 / 0 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10036717 [exp] 1370 / 0 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1) Lus10037211 [exp] 1365 / 0 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10013269 [exp] 407 / 6e-133 AT1G27000 254 / 8e-84 Protein of unknown function (DUF1664) (.1) Lus10021836 [exp] 405 / 2e-130 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Lus10042655 [exp] 357 / 5e-112 AT4G25000 567 / 0.0 alpha-amylase-like (.1) Lus10021728 [exp] 357 / 6e-112 AT4G25000 563 / 0.0 alpha-amylase-like (.1) Lus10036718 [exp] 350 / 3e-111 AT1G27000 272 / 1e-90 Protein of unknown function (DUF1664) (.1) Lus10037210 [exp] 350 / 5e-110 AT1G27000 252 / 8e-82 Protein of unknown function (DUF1664) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092900 [exp] 1261 / 0 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1) Potri.017G093200 [exp] 521 / 5e-167 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 412 / 1e-132 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Potri.014G029400 [exp] 393 / 1e-125 AT4G25000 580 / 0.0 alpha-amylase-like (.1) Potri.002G126300 [exp] 380 / 7e-121 AT4G25000 591 / 0.0 alpha-amylase-like (.1) Potri.010G092700 [exp] 282 / 4e-86 AT1G27000 331 / 1e-113 Protein of unknown function (DUF1664) (.1) Potri.008G149000 [exp] 274 / 3e-83 AT1G27000 327 / 3e-112 Protein of unknown function (DUF1664) (.1) Potri.014G160800 [exp] 160 / 2e-43 AT1G04960 309 / 6e-105 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.002G219300 [exp] 157 / 4e-42 AT1G04960 325 / 7e-111 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.001G058700 [exp] 91 / 3e-19 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF07821 [flax] [poplar] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0058 [flax] [poplar] PF07889 [flax] [poplar] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Lus10030793 pacid=23155242 polypeptide=Lus10030793 locus=Lus10030793.g ID=Lus10030793.BGIv1.0 annot-version=v1.0 ATGTCCTCCGTCACCACCGTTGAGCCGATCCTCCGATGTAGCCATTGGCGGGAGATTCACGGATCACTTAAGGCTACGAAGCTCTGCTGCTCAACTTCTT CTTTGCTCAACTGTTTGCGGCAGAAGCGGTTTGTTCGCGCCAACTTTGGGAAATGCAAGCTGCCTGTGGGTCGTGCCAAGGCTCCGGCCATGATCAGAGC CAGTCGATCGTCTTCTTCTTCCGGTACGGCTCTTCCGGAGACGTTTGTCTCATCTGGAGACGTGTTCTTCAGGCAGAGCTTCCCTGTCACTCGAACTGAA ACGGTTGATGGAAAGATATTTGTACGCGTAGATCAAAGTAACGGGAAAGGTGATTGGCAGCTAACTGTGGGATGCAGTCTTCCTGGGAAATGGATTCTTC ATTGGGGAGTTTCTTATGTCAATGATAGTGGAAGCGAATGGGATCAACCTCCAAAGCACATGAGACCCCCTGGTTCGGTGCCAGTAAAGAACTATGCAAT AGATACGCCTTTAAAGAAACCATCCGTAGATGATCTATTCTACGAAGTGAAGATTGATATTGATCCCAAGAGTGCAATTGCTTCCATCAATTTTGTCCTC AAGGATGAAGAAACTGGATCCTGGTATCAGCACAAGGGGAGAGATTTTAAGGTGCCTCTTGTGGATTACCTTCTTGATGATGGCAATTTTTCCGGCAGTA ACAGCTTCAATATTTGGCCAGGGCCTTTCTTTACCAACATACTTCTCAAATCAGAAAGGCAAAACAATGTCAGTGAGCTCAACGACAGTAAAACAGAAGA TCGTCAGCAAGAAGGGATCTATGAAGAGCAGCCCTTTACTAAACATACGACTCTTGAAAATTCGGTGACTGTTCTAGTTAGAACGTGCCCTGAGACGTCG AAAAATCTTCTCTATCTTGAAACTGATCTTCCCGGAGTTGTTCTGCACTGGGGCGTGTGCAGAGACGATGCTAAGAATTGGGAAATTCCATCTGGCCCTC ATCCACCTGAAACCATCATCTTCAAGGAAAGGGCTCTGCGGACTAAGTTGCAGGCAAAGGATGATGGGCGTGGATGTGCAGGGTTATTTACATTGGATGA AGATATTGCAGGTTTTCTTTTTGTTCTCAAGCTAAATGATAATACTTGGTTCAAATGTATGGGAAATGACTTCTACATCCCACTCTCAAGTTCAAGTAGG TTGCTTGCTCAACCTGGGCAGAAACATTCTGAAGATGCACCAGCCTCTGGAAAGGCTCTGGATGCAGATCAAGGTTCTGGTACTGCCTTCACTGACGGCA TAATTAAAGAAATAAGGAACTTGGTGAGTGGAATTTCTTTTGAGAACAGTCGAAAGGTAAAAACCAAAGAAGCACAAGAAAGCATCCTTCAGGAGATTGA GAAATTGGCAGCTGAAGCCTATAGTATCTTCAGAAGCTCCATACCGACTTTCAAAGAAGAGGTCGTTTTGGAAGAAGAGCTCGAGAAAGCTCCTCCTAAA AAATGCTCTGGTACAGGCAGTGGTTATGAAATACTGCTTCAAGGATTCAATTGGGAATCGCATAAATCTGGTCGATGGTATATGGATCTAAAAGATAAGG CTGAAGATATAGCTTCACTTGGGTTCACTGTCATATGGTTGCCTCCACCTACAGAGTCGGTGGCCCCTGGAGGGTACATGCCTAAGGGTTTATATAATTT GAACTCAAGATATGGAAGAATAGATGAGCTCAAGGACCTCGTGGGAAGACTTCATGACTCGGGTATTAAAGTTCTTGGAGATGCTGTCCTGAACCATAGA TGTGCGCACTATCAAAACAAGAATGGAATATGGAACATTTTTGGTGGTCGGTTAAGTTGGGATGATCGAGCAGTTGTTGCTGATGATCCACATTTCCAGG GTAGGGGAAACAAGAGCAGTGGGGACAATTTCCATGCAGCCCCTAACATTGATCATTCACAAGATTTCGTTAGGAAAGATATCAAAGAATGGATGGGATG GCTAAGAGAAGAAATTGGCTACGATGGCTGGCGGCTCGATTTCGTTAGAGGATTTTGGGGCGGCTATGTAAAGGATTACCTTGATGCGACCAATCCTTAT TTTGCTGTCGGTGAGTACTGGGATTCCCTCAGTTATACTTACGGAGAAATGGACCACAATCAAGATGCACACCGTCAACGAATCATTGACTGGATCAATG CAACAAATGGATCCGCTGGTGCATTTGATGTCACGACCAAAGGAGTTCTTCATGCGGCACTGGAAAAGTGTGACTATTGGCGTTTAGCAGATGAGAAGGG AAAGCCTCCAGGAGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTCGTCGAGAATCATGACACTGGCTCAACGCAGGGTCATTGGCGATTCCCAGGA GGGAAGGAAATGCAAGGATACGCATACATCCTCACTCATCCAGGAACACCTGCAGTTTTCTTTGACCATATCTACTCCTCCAACTATCGCTCCGAAATCG CAGCTCTCATTGCCTTCAGAAACCAACACAAACTCCACTGCCGCAGCGTAGTTAAAATCTCAAAGGCAGTAAATGACGTTTATGCAGCCATCATCGATGA CAAAGTAGCAATGAAGATCGGTCCAGGCCATTTCGAACCCCCAAAGGGACCTCGGAACTGGTCATTGGCTCTCGAGGGAAGGGATTACAAGGTTCCCGAG TTCTTTCGATTTTCAGCTCAACCATGGCCATGCAAGCTGCACTCAGTTCCCGACTTCTTCTACTCGGCGGAGCAGGTACGCTTCGCCACCGATCACTCAG CCTCTGGTGCCGTCTCTTTGATTCTGATTTTTCACTCATCTACAGGTTATTTTGGTACCGTATTGGTCAAGAAAGGTAAATTGTCCGACTTGATTGGCGA GCTCCAGACCTTGGTGAATGGAATTGAGGGAGGCGATACTGATGGCGAATCTGGTCACGCCGACGCCCTTGCTCAGCAGATTACTGTCTTAAATGGGAAT GGCCGGTCAGGCAATTTAACTGCTCTATTAATCCCCGGAGCTGTAGTTGGAGTAATAGGTTATGGTTATATGTGGTGGAAGGGCATGAAATTTTCGGATC TTATGTATGTAACAAAGAGAAATATGACTGCTGCTGCTGCAAAGTTGACGAAACATCTCGAGGACGTCACTGGTGCTCTGGCAAAAGCAAAGGAACATTT AAATCAGCGCATTAAGGGTTTGGACGATAAAATGGATGTTCAGAAGGAGATCTCAAAGGCAATTCAGAATGATGTCAATACTATCAATGAGAATATCCAG CTCCTCGACTCCGACCTGTTCGATTTGCAGCGTATTGTTTCTGGTTTGGATGGAAAGATAGGTTCGTTGGAGAACAAGCAGGATCTAGCGAATCTGGGAA TCACTTATCTATGCCACTTCGCTCAGGGGAAGAAATTGGCAATGCCTAAAGAGCTCAAGGATCACGTTGCTTCAGGAAAAAATCGTATTACATTCCACCA AGATGCAGGGGGTCTGAAGGCGTTGACCGATGATTCTTTCTGCAAGTTGGTGACCGAAAATCTAGATCTACCGCAAGTGTTCCAAAGATCAATGCTATCC AGATGA
AA sequence Show only first row Show all	>Lus10030793 pacid=23155242 polypeptide=Lus10030793 locus=Lus10030793.g ID=Lus10030793.BGIv1.0 annot-version=v1.0 MSSVTTVEPILRCSHWREIHGSLKATKLCCSTSSLLNCLRQKRFVRANFGKCKLPVGRAKAPAMIRASRSSSSSGTALPETFVSSGDVFFRQSFPVTRTE TVDGKIFVRVDQSNGKGDWQLTVGCSLPGKWILHWGVSYVNDSGSEWDQPPKHMRPPGSVPVKNYAIDTPLKKPSVDDLFYEVKIDIDPKSAIASINFVL KDEETGSWYQHKGRDFKVPLVDYLLDDGNFSGSNSFNIWPGPFFTNILLKSERQNNVSELNDSKTEDRQQEGIYEEQPFTKHTTLENSVTVLVRTCPETS KNLLYLETDLPGVVLHWGVCRDDAKNWEIPSGPHPPETIIFKERALRTKLQAKDDGRGCAGLFTLDEDIAGFLFVLKLNDNTWFKCMGNDFYIPLSSSSR LLAQPGQKHSEDAPASGKALDADQGSGTAFTDGIIKEIRNLVSGISFENSRKVKTKEAQESILQEIEKLAAEAYSIFRSSIPTFKEEVVLEEELEKAPPK KCSGTGSGYEILLQGFNWESHKSGRWYMDLKDKAEDIASLGFTVIWLPPPTESVAPGGYMPKGLYNLNSRYGRIDELKDLVGRLHDSGIKVLGDAVLNHR CAHYQNKNGIWNIFGGRLSWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWMGWLREEIGYDGWRLDFVRGFWGGYVKDYLDATNPY FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINATNGSAGAFDVTTKGVLHAALEKCDYWRLADEKGKPPGVVGWWPSRAVTFVENHDTGSTQGHWRFPG GKEMQGYAYILTHPGTPAVFFDHIYSSNYRSEIAALIAFRNQHKLHCRSVVKISKAVNDVYAAIIDDKVAMKIGPGHFEPPKGPRNWSLALEGRDYKVPE FFRFSAQPWPCKLHSVPDFFYSAEQVRFATDHSASGAVSLILIFHSSTGYFGTVLVKKGKLSDLIGELQTLVNGIEGGDTDGESGHADALAQQITVLNGN GRSGNLTALLIPGAVVGVIGYGYMWWKGMKFSDLMYVTKRNMTAAAAKLTKHLEDVTGALAKAKEHLNQRIKGLDDKMDVQKEISKAIQNDVNTINENIQ LLDSDLFDLQRIVSGLDGKIGSLENKQDLANLGITYLCHFAQGKKLAMPKELKDHVASGKNRITFHQDAGGLKALTDDSFCKLVTENLDLPQVFQRSMLS R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10030793 [exp]	0	1
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	1.0	0.9417
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10001777 [exp]	3.3	0.8682
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	4.0	0.8975
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	4.2	0.8963
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	8.1	0.8750
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10024165 [exp]	9.7	0.8409
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	10.2	0.8666
AT5G67350			unknown protein		Lus10010401 [exp]	12.6	0.8688
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	13.0	0.8743
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10002363 [exp]	14.8	0.8166

Compare expression of checked genes

Lus10030793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.