Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01280 380 / 3e-133 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT5G15090 359 / 2e-125 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT5G67500 251 / 2e-82 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G57490 241 / 1e-78 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G49920 154 / 2e-45 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2) AT5G37610 84 / 2e-19 Eukaryotic porin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013271 [exp] 528 / 0 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10015357 [exp] 378 / 1e-132 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 374 / 7e-131 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 339 / 6e-117 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 315 / 8e-107 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10019284 [exp] 231 / 1e-74 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 228 / 2e-73 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 210 / 2e-66 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 209 / 3e-66 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033500 [exp] 471 / 2e-169 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.008G194900 [exp] 471 / 2e-169 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.017G078200 [exp] 409 / 7e-145 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 258 / 2e-85 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.005G146800 [exp] 253 / 1e-83 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.018G093900 [exp] 248 / 1e-81 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.007G055800 [exp] 241 / 1e-78 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.014G016300 [exp] 224 / 4e-72 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.012G070300 [exp] 167 / 3e-50 AT3G01280 163 / 3e-49 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.001G294100 [exp] 165 / 1e-48 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10030794 pacid=23155232 polypeptide=Lus10030794 locus=Lus10030794.g ID=Lus10030794.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGTCCAGGACTCTACTCCGATATCGGCAAGAAATCTAGAGGTGAGGATTCCTTGATCGATTTCCGTTCGATTTCATGTCCTTCGATCGGTG ATTCGCCTACTGCTTTGCGAGATTTAATCGGTGTTTTGGTTTTCATTGTGTTTTTTTCAGATCTTCTTTATAGGGATTACCAGTCGGACCACAAGTTCAC TCTCACTACTTACACCGCCAATGGAGTCGCTATCACCTCGAGCGGTGTTAAGAAAGGTGAGCTGTTCTTGGCTGATGTGACCAGTCAGCTAAAGAATAAG AACATCACCACTGACCTGAAAGTGGACACCAATTCTAACCTATTCACCACCATCACCATTGATGAACCTGCTCCTGGATTGAAGACAATCTTCAGCTTCA AAGTACCTGATCAGAAATCTGGCAAGGTCGAACTCCAGTACCAACATGAGTACCTTGGGATCAACACTAGCATTGGCCTGACTGCAAGTCCTCTGGCTAA CTTCTCTGGCGTGGTTGGCAACAACATGGTAGCTCTCGGTACCGACCTCTGCTTCGATACCGCCTCTGGTAACTTCACCAAATTGAATGCTGGTTTGAGC TACACCACTTCTGACTTGATTGCTGCCCTCACCTTGAACAACAAGGGTGACTCGGTGACAGCATCCTACTACCACACTGTGAGCCCACTGACCAACACAG CCGTGGGGGCCGAGCTGACCCACAGCTTCTCGAGCAACGAGAACACTCTGACACTCGGCACCCAGCATGCCCTGGACCCATTGACCACCATCAAGGGAAG AGTGAACAACTACGGGAAAGCCAGTGCGCTCATCCAGCACGAGTTCCGCCCGAAGTCCCTCTTCACCATTTCAGGGGAGGTGGACACGAGGGCAATCGAA AAGAGCGCAAAGGTGGGTCTTGCACTTGCCCTGAAGCCCTGA
AA sequence Show only first row Show all	>Lus10030794 pacid=23155232 polypeptide=Lus10030794 locus=Lus10030794.g ID=Lus10030794.BGIv1.0 annot-version=v1.0 MGKGPGLYSDIGKKSRGEDSLIDFRSISCPSIGDSPTALRDLIGVLVFIVFFSDLLYRDYQSDHKFTLTTYTANGVAITSSGVKKGELFLADVTSQLKNK NITTDLKVDTNSNLFTTITIDEPAPGLKTIFSFKVPDQKSGKVELQYQHEYLGINTSIGLTASPLANFSGVVGNNMVALGTDLCFDTASGNFTKLNAGLS YTTSDLIAALTLNNKGDSVTASYYHTVSPLTNTAVGAELTHSFSSNENTLTLGTQHALDPLTTIKGRVNNYGKASALIQHEFRPKSLFTISGEVDTRAIE KSAKVGLALALKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	1.0	0.9830
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	1.7	0.9552
AT2G34560			P-loop containing nucleoside t...		Lus10023310 [exp]	3.2	0.9369
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	4.0	0.9609
					Lus10023559 [exp]	4.9	0.9500
					Lus10025731 [exp]	5.3	0.9300
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	8.1	0.9206
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	8.8	0.9416
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10023886 [exp]	10.1	0.9263
AT1G01910			P-loop containing nucleoside t...		Lus10041377 [exp]	10.9	0.9058

Compare expression of checked genes

Lus10030794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.