Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07040 391 / 8e-136 unknown protein AT1G27030 265 / 2e-87 unknown protein AT1G27020 261 / 1e-85 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013272 [exp] 601 / 0 AT1G07040 458 / 1e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194800 [exp] 411 / 7e-144 AT1G07040 471 / 6e-167 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030795 pacid=23155192 polypeptide=Lus10030795 locus=Lus10030795.g ID=Lus10030795.BGIv1.0 annot-version=v1.0 ATGATCACCCTCTCTGTATCATCATCCGCTCTCAAACCAAACGCTCATCTCCAATCACTTCCTCCATCTTCTCCTCCTCCTCCGACTATCGCCTTCGCCA ATTCGCGTCGTCACCCTTTTGCTGCTTCACTGAAACTGTCTCAGATGTCTATCGGATCGCGCTCCCTTTACAGCGTTTCTGCTTCCAAAGCTGAAAATGG ATCTCCCTCTTCTCCTTCTAAGCTGTTGAATTGTTGTTTGATGCGGAAGGTATCGGATTCGTTCCTCAGAAGCGTTCTGGGGCGAGTGGAATCGGTTTAT CTGAGCAGGAACCCGACTGCGAAAGCCATCTTGGAGCTTGTGGAGTCGGCCGATGGTTGTCAGCAAATCTGTTACGATCATCTCGCTTTCAGGACGTTTG GGGTGGATGGGCATGGGATTGATTCCATGGCTTTGCCTAGGGTGTTCATCTCGGAGTTGCTTGTTGATCAGATGAGTCCACAAGCTCAGGAAATCATTCG AAAGTATGTCGAAATATCGGGAAAGGGATACAAGCATGCAGCTCTTGCAAGTGCTCTTGGAATTTTGACATGGAACAAGCCTCTGCATTCCGAGTTTCAG CAGTTGGCAAGAGAGAGTGAATATGCTGCATGGACCCTTGTCAATGGATATGCCCTCAATCACGTCACTATCTCCGCTCATCGGCTCAAGTCTCACTTGA AGGAAATCAACAGCCTCAATCGGTTCATCGAAGAGAACGGCTTCAAATTGAACTCCGAGGGTGGTGTCCTCAAAGTGAGCCCTGACGGTCTTCTGCAGCA AAGCTCAACCGTAGCAGATTCAATGCCTTTCCAATTTGCTGATGGTGCCGTGGAACCAGTCCCTTGTTCCTACATCGAGTTCGCCGAACGCCTCGTGCTA CCCGAATACAAGAATCTTCCGAACGACCAGGTCGAAGAGTTTCACAGGCGAGACGGGTTCGAGGTTGGAAATGCTGATAAGATCTTTGAGAGCACGTCCA AAGAGCAATTAACACGTAGAGCTGCGTGA
AA sequence Show only first row Show all	>Lus10030795 pacid=23155192 polypeptide=Lus10030795 locus=Lus10030795.g ID=Lus10030795.BGIv1.0 annot-version=v1.0 MITLSVSSSALKPNAHLQSLPPSSPPPPTIAFANSRRHPFAASLKLSQMSIGSRSLYSVSASKAENGSPSSPSKLLNCCLMRKVSDSFLRSVLGRVESVY LSRNPTAKAILELVESADGCQQICYDHLAFRTFGVDGHGIDSMALPRVFISELLVDQMSPQAQEIIRKYVEISGKGYKHAALASALGILTWNKPLHSEFQ QLARESEYAAWTLVNGYALNHVTISAHRLKSHLKEINSLNRFIEENGFKLNSEGGVLKVSPDGLLQQSSTVADSMPFQFADGAVEPVPCSYIEFAERLVL PEYKNLPNDQVEEFHRRDGFEVGNADKIFESTSKEQLTRRAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07040			unknown protein		Lus10030795 [exp]	0	1
AT1G07040			unknown protein		Lus10013272 [exp]	1.0	0.9654
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	2.8	0.8969
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	4.0	0.8905
AT4G13270			Late embryogenesis abundant (L...		Lus10011095 [exp]	4.9	0.8609
AT4G26470			Calcium-binding EF-hand family...		Lus10027114 [exp]	5.7	0.8517
AT5G35460			unknown protein		Lus10017161 [exp]	7.9	0.8639
AT1G31940			unknown protein		Lus10012117 [exp]	8.8	0.8854
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	9.5	0.8808
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	10.2	0.8906
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	10.7	0.8877

Compare expression of checked genes

Lus10030795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.