Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 619 / 0 Protein kinase superfamily protein (.1) AT3G01300 593 / 0 Protein kinase superfamily protein (.1) AT3G28690 579 / 0 Protein kinase superfamily protein (.1.2.3) AT1G07570 431 / 1e-148 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 425 / 2e-146 APK1B protein kinase 1B (.1.2.3) AT5G02290 422 / 3e-145 NAK Protein kinase superfamily protein (.1.2) AT5G01020 416 / 7e-143 Protein kinase superfamily protein (.1) AT2G39660 407 / 2e-139 BIK1 botrytis-induced kinase1 (.1) AT2G02800 401 / 1e-136 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 395 / 2e-134 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030668 [exp] 657 / 0 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 654 / 0 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10013273 [exp] 596 / 0 AT3G17900 696 / 0.0 unknown protein Lus10038087 [exp] 472 / 4e-164 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10006643 [exp] 469 / 4e-163 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10000954 [exp] 431 / 8e-149 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10024391 [exp] 431 / 1e-148 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 431 / 1e-148 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10023794 [exp] 428 / 3e-148 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033800 [exp] 694 / 0 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 690 / 0 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 636 / 0 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 632 / 0 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 622 / 0 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 481 / 6e-168 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 473 / 1e-164 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 446 / 1e-154 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 442 / 5e-153 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 432 / 4e-149 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030796 pacid=23155371 polypeptide=Lus10030796 locus=Lus10030796.g ID=Lus10030796.BGIv1.0 annot-version=v1.0 ATGGTATTAGGCGGCGGGAATGCTAATAAATTGAAGAAGAAGGAGAAGAAGAAGAAGAGGAAGGAAAAAAGTGGCTCCAATGGCGTCCCTCGTTTCGCTG AGGATTGTATTAAAGAGTCTGACGAGCCAGGTTGCTGGCTCCAATGGCGGCTTCTCAGCACCTGCATTTCTTCGAGATCTAAGGTCGATAGCTCCGTCAG TGGGAACAGCAATAGCTACGCTGAAAGTAAATCAACGAATGACACAAGCAAAGACCAGCCGACTCCTCCCATTGTATCGTCCACAACAACGAGTAACACC GAGAGCAATGCATCAACTTCGAAGCTAGAGGAGGAGCTTAAAGTTGCTTCTCGTCTACGGAAATTCACTTTCAACGACCTAAAGTTGGCGACGAGAAATT TCAGACCGGAGAGCCTTCTAGGGGAGGGCGGTTTTGGTTGCGTGTTTAAAGGGTGGATTGAAGAGAATGGAACTGCTCCTGTGAAACCCGGCACGGGGCT TACTGTTGCCGTTAAAACCCTCAATCACGACGGGCTTCAGGGCCATAAAGAATGGCTGGCTGAAGTTAATTTTCTTGGCGATCTTGTTCATGTCAACTTG GTTAAGCTTATTGGTTACTGCATTGAAGATGATCAAAGGCTTTTGGTTTACGAGTTTATGCCTCGAGGAAGCTTGGAGAATCACTTATTTAGAAGGTCGT TGCCTCTTCCATGGTCCATAAGAATGAAAATTGCACTCGGTGCTGCAAAGGGTCTTGCATTTCTTCACGAAGAAGCGGAAAGACCGGTTATTTATCGTGA CTTCAAGACTTCGAATATCCTTCTTGATGCGGTATTGGATTATAATGCGAAACTTTCGGACTTTGGACTTGCTAAAGACGGACCTGAAGGAGACAAGACT CATGTATCCACTCGGGTCATGGGGACTTATGGTTACGCAGCTCCCGAGTATGTAATGACAGGACATCTTACATCAAGAAGTGATGTCTACAGCTTTGGTG TAGTCCTACTCGAAATGATCACTGGCCGAAGATCCATGGACAAGAACCGGCCAAATGGGGAACACAATCTGGTCGAATGGGCGAGGCCCCATCTCGGAGA GAGAAGGAGATTCTATCGACTGATAGACCCTCGGCTCGAAGGCCATTTCTCGATAAAGGGCGCCCAGAAAGCCGCACAGCTAGCTGCTCTCTGCCTAACT CGCGACCCAAAAGCCAGGCCGCTGATGAGTGAAGTCGTCGAGGTTCTGAAGCCTCTCCCTAGCATGAAGGACATGGCCAGCTCGTCGTATTACTTCCAGA CTATGCAAGCTGACCGATCGGCCAGCAGCCCAAATTCGAAAAGTGGCGGCAGCAATCGGACGACAATGCAAGGAGGAGGAATGATGTCGCGACATCAGCC GAGAAGCCTTTCGATACCGAATGGCTCGCATGCTTCTCCATATCATCATCACCAGTTTCTTCCTCATCAGTCCCCGAAACCCGGTGCCAAACATTAG
AA sequence Show only first row Show all	>Lus10030796 pacid=23155371 polypeptide=Lus10030796 locus=Lus10030796.g ID=Lus10030796.BGIv1.0 annot-version=v1.0 MVLGGGNANKLKKKEKKKKRKEKSGSNGVPRFAEDCIKESDEPGCWLQWRLLSTCISSRSKVDSSVSGNSNSYAESKSTNDTSKDQPTPPIVSSTTTSNT ESNASTSKLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHVNL VKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAVLDYNAKLSDFGLAKDGPEGDKT HVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAALCLT RDPKARPLMSEVVEVLKPLPSMKDMASSSYYFQTMQADRSASSPNSKSGGSNRTTMQGGGMMSRHQPRSLSIPNGSHASPYHHHQFLPHQSPKPGAKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	1.7	0.9064
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	1.7	0.9103
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	3.9	0.9042
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	4.2	0.8912
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	4.5	0.8888
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	4.5	0.9077
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	6.3	0.8530
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	6.5	0.8692
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	6.7	0.8781
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10001242 [exp]	7.4	0.8824

Compare expression of checked genes

Lus10030796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.