Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17900 719 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013273 [exp] 1282 / 0 AT3G17900 696 / 0.0 unknown protein Lus10036712 [exp] 1037 / 0 AT3G17900 820 / 0.0 unknown protein Lus10037215 [exp] 1035 / 0 AT3G17900 825 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033900 [exp] 816 / 0 AT3G17900 843 / 0.0 unknown protein Potri.008G194566 [exp] 240 / 3e-73 AT3G17900 229 / 6e-69 unknown protein Potri.008G194632 [exp] 179 / 6e-52 AT3G17900 195 / 5e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030797 pacid=23155274 polypeptide=Lus10030797 locus=Lus10030797.g ID=Lus10030797.BGIv1.0 annot-version=v1.0 ATGAATTTTTTGCTCCGGTCTACTAGTCAGCATGTAGTACCTGAGAAGGTTCCTGCTCATGAACCTGCCGTTGACGTACAGTACATGGCCAAACCTACCA AGACTTTGGAAGGTCTGATCTTTGAAGATCCGTTTCCCGAGTCGCCAATGGCTCGAGGTCGCGAAGGAGAGGCAGAGGAAGTTGGAGCTGAGAATGGAAA TAAAAATGAAACTGTAAAGAAAGATTCTAGTGTGATTGAGGGACATTCGGATGTTCTGGAAGAAGACGGATGGATTACCATTCCACACAAGGAACTTCCT GAAGATTGGAATTCTTCACCAGATATAAAGTCGTTACGATCCTTGGACCGGTCATTTGTCTTTCCTGGTGAACAAGTGCATATACTAGCATGTTTATCAG CATCAAATCAAGATACGGAAACGATTACTCCGTTCAAAGTTGCTGCTGTTATTTCTCAAAGTGGCAGACAAAGTCCGGAGCGACGAAATGGGAACTTAAG TGACAGAACTTTGGAGGAAGGTAATCTTGGTGGCGAAGATGCAGAAATATTGTTGCAACAAAAGCTCGCCCCAGAAGATGTTGTTTCTGCCAGTGAATCA ATTCTCAGAAAGGAGGATCACAAAAGACAAACAGAAACGTTATTGCAAAGATTCAAGAACTCCCATTTTCTTGTTAGGATTGTAGAGTCAGATGAGCCAC TTTGGTCAAAACCTACATGCCGTTTGGGTCAAAGCCTACCATTTATATATGTACTTCTACAAGTTAATGTTGGTACTCATATTCTCAGAGACCCTGTCAT TGAGATTCTTCAGTTTGAGAAATACCAAACAAGAAATCCGTCTTCTGCAAGCCCCAATACTCTGAATTTTGCTAATGCTGACCCTTATGGACAACTGTTG AAATGGTTGCTTCCTTTGGATAACACTCATTATCCTCCTCCACGTGCCTTATCCCCACCCCAGAGACCTCCTATTTCAGTTATTGCTCCCACATCTCAGA AACCTGTGTCTTCTGGTTCACAACTTTTCTCTCATTTTAGAAGTTACTCCATGTCATCAATACCTCAGGCAAGTATTCCACCTACTCAACCAGTTAAAGC TCAAAGCTCTAAACCAAAATTTGACATCGATGAATGGGAAGAGCACTCAACTCAGAAATTGAGAAAAGATCGACAAAATGGTGGCGATGGAATTTTCTCT TTTCGAGGTGTTTCATTAGAGCAAGAAAGATTTTCAGTGCGTTGTGGTCTGGAAGGCATGTACATCCCAGGAAAAAGATGGAGAAGAAAACTTGAAATTG TTCAACCTGTGGAGATCCATTCCTTTGCTGCAGATTGTAATACAGATGACTTGCTTTGTGTTCAGATAAAGAACATATCTCCAGCACACTTGCCGGATAT AGTGGTGTACATAGATGCTATAACAATGGTTTTCAATGAGGCTGCAAAGGATGGCGCACCATTATCCTTGCCAATAGCATGCATTGAAGTAGGAGATGAT CATTGTTTACCAAATCTAGCCCTCAGGAGGGGTGAAGAACACTCTTTCATCCTCAAACCAGCATCGTCAATGTGGAAAAGTCCAAAGGTTCCCAGTGAGA GAAATTTTTCATCAGCTCTACGTCAATCTCAGTTTGCTACTGAAATGAGTAGTAGTAATTCAAACACCGACATATATGCTATTATGGTATCATGTCGCTG CAACTACACTGAGTCGAGACTGTTTTTCAAACAGCCAACTGATTGGAGACCGCCTATCTCTAGGGATCTCTTGATCTCTGTTGCACCCGAACTGTCCCTC CGGTCTTCTCCAAACGATAAAGTCTCCCATCTTCCAGTTCAGGTTTTAACTCTTAGAGCCTCCAATCTGACATCCGAAGATCTCACTCTAACAGTTCTTG CTCCGTCCTCGTTCACCGCTCCTCCTTCAGTCGGGTCCTTGATTTTGACACCAGCAACTCAAATGGATACAACAATTGGCGCCACGAGAAAACGTACCGA AAGGGTTGGCAGCAAAATGCACAGCAGAATGGTTTCGGCACCAGCCGCGCTCGAACAGCTAGACGAGGACGGTCTATCTGCCTCTGTCGATACTCAGTCT TCTGCCATACCTGATGTTATCTCAAGTACTGGTCTTGGCTGCACTCATCTATGGCTGCAGAGTAGAGTCCCATTAGGGTGCGTCCCTGCGAATTCAACGT TCACAATCAAGCTGGAGCTACTTCCTTTGACCGACGGTATAATCACACTCGATACCTTACAGATTGATGTCAAGGAAAAAGGTGTATACTAG
AA sequence Show only first row Show all	>Lus10030797 pacid=23155274 polypeptide=Lus10030797 locus=Lus10030797.g ID=Lus10030797.BGIv1.0 annot-version=v1.0 MNFLLRSTSQHVVPEKVPAHEPAVDVQYMAKPTKTLEGLIFEDPFPESPMARGREGEAEEVGAENGNKNETVKKDSSVIEGHSDVLEEDGWITIPHKELP EDWNSSPDIKSLRSLDRSFVFPGEQVHILACLSASNQDTETITPFKVAAVISQSGRQSPERRNGNLSDRTLEEGNLGGEDAEILLQQKLAPEDVVSASES ILRKEDHKRQTETLLQRFKNSHFLVRIVESDEPLWSKPTCRLGQSLPFIYVLLQVNVGTHILRDPVIEILQFEKYQTRNPSSASPNTLNFANADPYGQLL KWLLPLDNTHYPPPRALSPPQRPPISVIAPTSQKPVSSGSQLFSHFRSYSMSSIPQASIPPTQPVKAQSSKPKFDIDEWEEHSTQKLRKDRQNGGDGIFS FRGVSLEQERFSVRCGLEGMYIPGKRWRRKLEIVQPVEIHSFAADCNTDDLLCVQIKNISPAHLPDIVVYIDAITMVFNEAAKDGAPLSLPIACIEVGDD HCLPNLALRRGEEHSFILKPASSMWKSPKVPSERNFSSALRQSQFATEMSSSNSNTDIYAIMVSCRCNYTESRLFFKQPTDWRPPISRDLLISVAPELSL RSSPNDKVSHLPVQVLTLRASNLTSEDLTLTVLAPSSFTAPPSVGSLILTPATQMDTTIGATRKRTERVGSKMHSRMVSAPAALEQLDEDGLSASVDTQS SAIPDVISSTGLGCTHLWLQSRVPLGCVPANSTFTIKLELLPLTDGIITLDTLQIDVKEKGVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17900			unknown protein		Lus10030797 [exp]	0	1
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	3.5	0.8845
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	5.7	0.9001
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	8.0	0.8752
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	10.2	0.8798
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10038806 [exp]	12.6	0.8441
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	15.3	0.8737
AT2G16405			Transducin/WD40 repeat-like su...		Lus10017483 [exp]	16.4	0.8564
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10015463 [exp]	18.2	0.8550
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	20.3	0.8737
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10042326 [exp]	20.7	0.8632

Compare expression of checked genes

Lus10030797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.