Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14430 595 / 0 glyoxal oxidase-related protein (.1) AT3G57620 543 / 0 glyoxal oxidase-related protein (.1) AT1G19900 510 / 2e-176 glyoxal oxidase-related protein (.1) AT1G75620 500 / 1e-172 glyoxal oxidase-related protein (.1) AT3G53950 429 / 7e-145 glyoxal oxidase-related protein (.1) AT1G67290 400 / 6e-133 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 393 / 3e-130 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015949 [exp] 537 / 0 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10013275 [exp] 520 / 0 AT1G14430 306 / 2e-101 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 490 / 8e-169 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10013274 [exp] 421 / 1e-145 AT1G14430 301 / 1e-99 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 428 / 2e-144 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 399 / 2e-132 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 400 / 2e-131 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 388 / 2e-127 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 384 / 6e-127 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034200 [exp] 665 / 0 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 551 / 0 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 535 / 0 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 532 / 0 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 526 / 0 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 515 / 2e-178 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 473 / 5e-162 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 423 / 1e-142 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 417 / 3e-139 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 415 / 2e-138 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10030798 pacid=23155240 polypeptide=Lus10030798 locus=Lus10030798.g ID=Lus10030798.BGIv1.0 annot-version=v1.0 ATGGCGCCCAAGAAGAACCAATCAATCCTCCTATTGATCTTCAACCTCATCATAATCCTCCTCCTCCGATCTTCCACACACACGGCGGCCGCCACAGCCG GCGGCGGCGGCAACTGGGTTCTCGTCCACAAGAGCATTGGCATCTCGGCAATGCATATGCAGGTCTTGAGAAACAACAAGGTGATAATGTTCGACCGCAC TGACTTCGGAAACTCCAACATTTCTTTACCTGACGGGAAATGCAGATTCGACGAGACACTCTCTCCGGTGGACTGCTCGGCTCATTCTGTGCTGTACGAC GTCGCTTCGAACACCATCCGTCCGCTGCTGCTCCAAACGAACACCTGGTGCTCGTCGGGATCCCTCGATGCCGACGGGGTCCTCATACAGACCGGCGGCC ACGGCGAGGGGGAGAAGATCATCCGCGCGTTCAGACCTTGCGACGACGTACATGACAAGTCTTGCGACTGGATCGAGCTCTACGACACCAGCTTGATGAA TCGGCGTTGGTACGCCTCCAATCAGATCCTCCCCGACGGCAGGATCGTCATCGTCGGCGGTAGACGAGTATTGAGACGAGTCTTCACCTACGAATTCTTC CCCAAATCGACGTCATCATCATCCCAATTCGACAACCGGACACTAGATTTCCTGACCCGAACCCGCGACCCGGACGAAGAAAACAACCTCTACCCTTTCC TCCACCTCTTACCCGACGGAAACCTCTTCATCTTCGCCAACAATCGCTCGATTCTATTCGATTACTCGAGAAACATCGTCGTCAAAGACTATCCGCCGAT TACCGGCGGTGATCCACGGAATTACCCCGCCACCGGCTCCTCCGTCCTCCTCCCACTCCATTGGTCGGGTTCCTCGTCGCCTCCGGCGGCGGAAGTAATG GTCTGCGGCGGAGCTCCGGCGGGTGCGTTCGCGAAGGCTAGCAATTTTAGCATATTCGTGGAAGCTTCAAGAACCTGCGGCCGGTTGAAGGTATCCGACC CGGTACCGAAATGGGTCATGGAGCATATGCCGGGACCCCGACTCATGAGCGATATGATTCTCCTGCCTACAGGAGATGTGGTTCTAATCAACGGAGCATC GAAAGGAAGCGCGGGTTGGAATAACGCCCGCGACCCAGTTTACAGCCCGTTTCTTTACCAACCATCGGAATCGGATTCGTCCCGGAGATTCGTAATCCTT CCGCCGTCGAGTATCGCGAGGATGTACCACTCGACGGCGGCGCTGCTACCGGACGGGAGGATTCTTGTCGGCGGGAGCAACCCACACCCGACGTACAACT TCACGGGGGAGTATCCAACCCGGCTGAGCTTGGAGGCGTTTCATCCAGGGTATCTCGACGCAGACTACGCTCATTTGCGTCCGTCGATCACGGCCGGAAA GAGCTCGGTGAATGGAACGGTGTCGTATAAGGAGAAGTTTGCCGTTTCGTTCGCCGTTCGGTATCTTGATCCTTACGCGGAGGTTTCGGTGGTGGTGATC GCGCCGTCGTTCAGCACGCATTCGTTCGGGATGAACCAGAGGGTGGTTGGGCTTGGGATTGTGGGCCTGGATCGGGTGTCTGATGTTGGGCTGAAGATGA GTGTTGTTGGGCCGAATGATGCCAACGTGGCGCCTCCTGGGTATTATATGATGTTTGTGGTGCATCATGGGGTTCCTAGTGTTGCTGTTTGGGTTAAGAT CAGGTGA
AA sequence Show only first row Show all	>Lus10030798 pacid=23155240 polypeptide=Lus10030798 locus=Lus10030798.g ID=Lus10030798.BGIv1.0 annot-version=v1.0 MAPKKNQSILLLIFNLIIILLLRSSTHTAAATAGGGGNWVLVHKSIGISAMHMQVLRNNKVIMFDRTDFGNSNISLPDGKCRFDETLSPVDCSAHSVLYD VASNTIRPLLLQTNTWCSSGSLDADGVLIQTGGHGEGEKIIRAFRPCDDVHDKSCDWIELYDTSLMNRRWYASNQILPDGRIVIVGGRRVLRRVFTYEFF PKSTSSSSQFDNRTLDFLTRTRDPDEENNLYPFLHLLPDGNLFIFANNRSILFDYSRNIVVKDYPPITGGDPRNYPATGSSVLLPLHWSGSSSPPAAEVM VCGGAPAGAFAKASNFSIFVEASRTCGRLKVSDPVPKWVMEHMPGPRLMSDMILLPTGDVVLINGASKGSAGWNNARDPVYSPFLYQPSESDSSRRFVIL PPSSIARMYHSTAALLPDGRILVGGSNPHPTYNFTGEYPTRLSLEAFHPGYLDADYAHLRPSITAGKSSVNGTVSYKEKFAVSFAVRYLDPYAEVSVVVI APSFSTHSFGMNQRVVGLGIVGLDRVSDVGLKMSVVGPNDANVAPPGYYMMFVVHHGVPSVAVWVKIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	0	1
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031321 [exp]	2.8	0.9283
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	3.0	0.9392
					Lus10042300 [exp]	4.6	0.9109
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10033237 [exp]	5.2	0.9032
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	5.5	0.9154
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	5.9	0.9180
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	6.7	0.9246
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	8.0	0.9203
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	8.2	0.8796
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	12.0	0.8782

Compare expression of checked genes

Lus10030798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.