Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 724 / 0 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 676 / 0 Major facilitator superfamily protein (.1.2) AT5G62730 627 / 0 Major facilitator superfamily protein (.1) AT1G59740 391 / 3e-129 Major facilitator superfamily protein (.1) AT1G33440 371 / 3e-121 Major facilitator superfamily protein (.1) AT3G25260 360 / 2e-118 Major facilitator superfamily protein (.1) AT3G25280 355 / 7e-116 Major facilitator superfamily protein (.1) AT5G01180 341 / 5e-110 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 341 / 6e-110 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 338 / 1e-108 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013276 [exp] 1074 / 0 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 827 / 0 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 826 / 0 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 690 / 0 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 430 / 4e-144 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 410 / 2e-136 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 394 / 2e-130 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 389 / 2e-128 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10025881 [exp] 379 / 2e-125 AT3G25280 558 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034300 [exp] 754 / 0 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.012G070700 [exp] 677 / 0 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.004G064100 [exp] 427 / 6e-143 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 407 / 2e-135 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.002G129500 [exp] 395 / 4e-131 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.019G067500 [exp] 384 / 3e-126 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 382 / 2e-125 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 379 / 4e-124 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.002G249100 [exp] 363 / 3e-119 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 346 / 1e-111 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10030799 pacid=23155221 polypeptide=Lus10030799 locus=Lus10030799.g ID=Lus10030799.BGIv1.0 annot-version=v1.0 ATGTTTTTTTGTCTGGTTCTGCCAATCATTGTGTTTTTGTTTGGTCGTATGATGTTGGGTCCTTTTGCGGAACAGGAATTGGAAGGAGCTGGGAGATGGG AAGGGTATGTGGATTGGAGAAACAAGCCTGCAATTCGAGGCCGCCATGGTGGCATGCTGGCTGCTTCCTTTGTTCTTGGGGCGGAGGTGATGGAGAACTT GGCGTTTCTGGCGAATGCGAGCAACTTGGTGATGTACATGGCGGAGTACATGCACTTTACACCGTCGAAGTCGGCGATTAACGTCACGAACTTCATGGGG ACTGCTTTCCTTTTGGCACTCCTTGGTGGCTTCCTTTCTGATGCTTTCTTCACCACTTATCAGATTTACCTCATCAGTGCCGTCATTGAATTCCTGGGTT TGGTGATTCTAACAGTCCAAGCAAAGTCACCATCACTGAAGCCACCAACTTGCACCATCAACATCAACAACACGGAGAATCCATGCCAGGAAGTTGAAGG AGGGCAAGCAGCAATGCTGTTCATAGGACTATACTTGGTGGCACTTGGAGTTGGAGGGATCAAGGGCTCTCTGCCTCCACATGGCGCCGAGCAATTCGAC GACAGTACTCCAAAGGGAAGGAAGCAGAGGTCAACTTTCTTCAACTACTTTGTGTTCTGCCTCTCCTGTGGTGCACTCATTGCTGTCACATTTGTGGTTT GGGTTGAGGACAACAAAGGCTGGGAATGGGGGTTCGGTCTTTCCACCATTGCCATCTTTCTCTCTGTTCCTATCTTCCTTGCTGGCTCTCCTACTTACAG GAGCAAGATCCCTTCTGGTAGTCCACTCACCACCATTTCTAAAGTTTTGGTGGCAGCAACAATCAACAGATATTTGAACAGCAGGAGTCCAAGCAATGCC ATAGCAAACCATGAAACCGAACAACACCAACAAGACATCATCAACAACAATCACAAAACAACAATGCATCATCATCCAACAAAGAGCCTAAGCTGCCTCA ACATTGCAGCAATGAAGAACAAGCCCTTCAATTGCACAATCCAGCAAGTCGAAGACGTGAAAATCGTAATCAAAATCCTCCCGATTTTCGCCTGCACCAT CATTCTCAATTCCTGCCTAGCTCAGCTCTCCACATTCTCAGTCCAACAAGCAGCAACCATGAACACCAACTTCCCAGGCACTTCATTCAAAGTCCCACCA GCTTCCCTCCCGGTCTTCCCGGTCATATTCATCATGATCCTCGCCCCAATCTACGACCACTTCATCGTCCCATTCGCCAGGCGAGTCACCAAGTCCGAGA CCGGAATCACTCACCTCCAACGAATCGGGGTCGGACTAGTCCTCTCCATCGTAGCCATGGCAATTGCAGCATTGGTTGAGGTCAAGAGGAAAAGTGATCA CGATCCGTCGCGAATCACATTCTTGTGGATAGCATTGCAGTACTTGTTCTTGGGATCAGCTGACCTTTTCACATTGGCAGGGCTGCTTGAGTTCTTCTTC TCCGAGGCACCTTCCGCCATGAGATCGCTCGCTACTTCCTTGTCGTGGGCTTCTCTCGCGATGGGGTACTACCTTAGCTCGGTGATCGTGTCTGTGGTGA ACGAGATCACGAGAGGTGATGCTTGGTTGTTGGGGAAGGACATTAATGAGTATCACCTTGAGAGATTCTACTGGCTGATGTGTGTTCTTAGTGCTTTGAA CTTTGGACATTACCTTTTCTGGGCTTGCCGGTGCAAGTACAGGTCTTCAACTGATGCATCTGCTAGTGGTGGCAGCCATTGA
AA sequence Show only first row Show all	>Lus10030799 pacid=23155221 polypeptide=Lus10030799 locus=Lus10030799.g ID=Lus10030799.BGIv1.0 annot-version=v1.0 MFFCLVLPIIVFLFGRMMLGPFAEQELEGAGRWEGYVDWRNKPAIRGRHGGMLAASFVLGAEVMENLAFLANASNLVMYMAEYMHFTPSKSAINVTNFMG TAFLLALLGGFLSDAFFTTYQIYLISAVIEFLGLVILTVQAKSPSLKPPTCTININNTENPCQEVEGGQAAMLFIGLYLVALGVGGIKGSLPPHGAEQFD DSTPKGRKQRSTFFNYFVFCLSCGALIAVTFVVWVEDNKGWEWGFGLSTIAIFLSVPIFLAGSPTYRSKIPSGSPLTTISKVLVAATINRYLNSRSPSNA IANHETEQHQQDIINNNHKTTMHHHPTKSLSCLNIAAMKNKPFNCTIQQVEDVKIVIKILPIFACTIILNSCLAQLSTFSVQQAATMNTNFPGTSFKVPP ASLPVFPVIFIMILAPIYDHFIVPFARRVTKSETGITHLQRIGVGLVLSIVAMAIAALVEVKRKSDHDPSRITFLWIALQYLFLGSADLFTLAGLLEFFF SEAPSAMRSLATSLSWASLAMGYYLSSVIVSVVNEITRGDAWLLGKDINEYHLERFYWLMCVLSALNFGHYLFWACRCKYRSSTDASASGGSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10030799 [exp]	0	1
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10042281 [exp]	1.7	0.8917
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	2.2	0.8735
AT4G13030			P-loop containing nucleoside t...		Lus10025900 [exp]	3.9	0.8607
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10034437 [exp]	10.0	0.8480
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	18.1	0.8828
AT5G27510			Protein kinase superfamily pro...		Lus10034216 [exp]	22.7	0.8784
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	33.7	0.8681
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	35.3	0.8085
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10021422 [exp]	36.0	0.8510
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	36.4	0.8725

Compare expression of checked genes

Lus10030799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.