Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27070 196 / 2e-55 5'-AMP-activated protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013279 [exp] 798 / 0 AT1G27070 198 / 1e-56 5'-AMP-activated protein kinase-related (.1) Lus10037220 [exp] 290 / 1e-90 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1) Lus10036706 [exp] 288 / 2e-90 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1) Lus10023481 [exp] 94 / 2e-19 AT2G39260 1537 / 0.0 binding;RNA binding (.1) Lus10040364 [exp] 89 / 7e-18 AT2G39260 1620 / 0.0 binding;RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194300 [exp] 230 / 7e-68 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.010G034600 [exp] 225 / 3e-66 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.010G216100 [exp] 62 / 8e-10 AT2G39260 1533 / 0.0 binding;RNA binding (.1) Potri.008G045400 [exp] 58 / 2e-08 AT2G39260 1375 / 0.0 binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04050 [flax] [poplar] Upf2 Up-frameshift suppressor 2
Representative CDS sequence Show only first row Show all	>Lus10030802 pacid=23155226 polypeptide=Lus10030802 locus=Lus10030802.g ID=Lus10030802.BGIv1.0 annot-version=v1.0 ATGCTTCCCGTCACAACCGTAGACTCCCATCATCTCTTCATTCCACCGCGTTTGAGCTCTCGTCAAACGCTCCGTACCGCCAATGCCACCACCACCACCA CCACCAACATCACTCGTGTTGTTTCTCTGCGTTGTGCGGCGATTTTGAAGGAAGAGGCGCCGCTGCTGCTGGGGTTTCTTGATGGTAGGAAGAGGAATGT TAGTGTTAGGGATTCTGTGGTGGAGTTTGGTGTTGGGAAGTTTGTGAGGAGGTGTAGCCAAGATTGGGGGAGTGAAGGAGGAGATTACTCTGCACTGGAA GCTGAGATTTTGGAGTTCATGAAGAGCTCTGAGGATCCCGAAGGGTTTCCGTCCAAGAAAGAGTTGATTGATGCGGGAAGAAGTGATCTTGTGGAGGGTA TTGTGAGGAAAGGTGGGTGGATGGCTTCTGGATGGGATTCGGAAGAGGATGAAAGCCAAGGAGATGAAGTTATGGACTGGAAGATGGAGACTGAATCAAC GAATTTGATATTGGACGAGAATGAGAGCCAAGAAGTGTTACCAGAAAGTGCTGCTGAGGACGATTCAGGAATTGACGGTCTGTTGAGTAGATTGAAGAGA GAAAGGAATTTGAAGTTAGGGATTAAATTGGCAAAGAGAGGAGAAGGTACTCATCCCGCATATGAGGAGCCTTGTACAGCTTCCAAATATTCGACCTTAG CTGATATAAAAAGAAACAGTGAACCTGCATCAGTAGACCACAACAATGGCAAGACCAGTCACTTAAGCCAATTAACAAGTGTTGGTGGCTTAGAGAAATC ACTTAAGCCTGATGATTGGAGAACATGGAGTGCACAGAGGGGAGCATCTGCACTTGAATATTTTGAAGGCTGTGAAATAATTTCTGAAGAATCTAGAACT GAAGAAGTGGATGGTTTAGGATCTGAAGCATTTCAGACAGTGGAGGGAAAGAAGACTGGAATTTTTGAAGCAGGTTTGGGTCCCATAAGAATTCGGCTTC GGCAGATGGAGTCTGAACTTTCAACTAAAATTTTGTTAAGTGGGAAAAACAGAATCGAACTTTACAATTTACCCAAACTGGTTGAATTTGAGAGCGTGCT CATTCAGTCATTATCTGATCTAAGTTTCACTCTACACCAGGCGAGCGAGAGCTCATGTGATGATCAGGCTAGCGAGAGCTCATGCGATGAAGAACTTCTG AAGCTGTACGATGATTTGGAATTCCGTGAAACTGAGATCATGCGTCACAAGGACAAGTTACGGTCTACCCGAGCGAAGTTAGCAATTGAGGAAGGCAGAA TGGCTCTTAGAACGATTGACGCACAAAGACTAGAAGAAGAGAAACGGAAAAGCGGAAGCAGTGCTTACAAGGCTCTGCAGCTTCTAAGCACAGCATACCT AGTTTGGACTAACAACGCCACAGAAGTGCTTGTAACTGGATCATTCGACGGATGGGCTACCAAAATGGAATTGTCAAGCATTAGCATAATTGTTACGGTT GATTTGCTAAGTGCACAATGTTATGTATATCAGCTTCCATGGTTACATGAGGAAGTTGTGGATAATATCACTGATTCAGGCAGAGACACAAATGATCATG AGGGACATGATGATGAGTTGGATGAAGAAACCCATGATGATGGTGACACAGATGACGAGGATTATGACCACAGGGGTGCGCCTGGTTCTGACGAGGATGA TGAAGTCCGAATTAGACAAAAAGTAGCACAAGTGGACCCTGAGGAGGCTGCAAGTTTTGAACAGGAGTTAAGAGCTGTTATGCAGGCAAGATCATAA
AA sequence Show only first row Show all	>Lus10030802 pacid=23155226 polypeptide=Lus10030802 locus=Lus10030802.g ID=Lus10030802.BGIv1.0 annot-version=v1.0 MLPVTTVDSHHLFIPPRLSSRQTLRTANATTTTTTNITRVVSLRCAAILKEEAPLLLGFLDGRKRNVSVRDSVVEFGVGKFVRRCSQDWGSEGGDYSALE AEILEFMKSSEDPEGFPSKKELIDAGRSDLVEGIVRKGGWMASGWDSEEDESQGDEVMDWKMETESTNLILDENESQEVLPESAAEDDSGIDGLLSRLKR ERNLKLGIKLAKRGEGTHPAYEEPCTASKYSTLADIKRNSEPASVDHNNGKTSHLSQLTSVGGLEKSLKPDDWRTWSAQRGASALEYFEGCEIISEESRT EEVDGLGSEAFQTVEGKKTGIFEAGLGPIRIRLRQMESELSTKILLSGKNRIELYNLPKLVEFESVLIQSLSDLSFTLHQASESSCDDQASESSCDEELL KLYDDLEFRETEIMRHKDKLRSTRAKLAIEEGRMALRTIDAQRLEEEKRKSGSSAYKALQLLSTAYLVWTNNATEVLVTGSFDGWATKMELSSISIIVTV DLLSAQCYVYQLPWLHEEVVDNITDSGRDTNDHEGHDDELDEETHDDGDTDDEDYDHRGAPGSDEDDEVRIRQKVAQVDPEEAASFEQELRAVMQARS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	0	1
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	1.4	0.7814
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	7.1	0.7413
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	12.6	0.6988
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	19.0	0.7302
AT5G09580			unknown protein		Lus10020476 [exp]	19.7	0.6885
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10039919 [exp]	21.7	0.6491
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	23.2	0.7244
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	25.1	0.6611
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	27.6	0.7009
					Lus10000761 [exp]	27.7	0.6074

Compare expression of checked genes

Lus10030802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.