Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10350 409 / 2e-143 DNAJ heat shock family protein (.1) AT1G59725 402 / 3e-141 DNAJ heat shock family protein (.1) AT3G47940 364 / 7e-126 DNAJ heat shock family protein (.1) AT2G20560 357 / 3e-123 DNAJ heat shock family protein (.1) AT3G08910 353 / 4e-122 DNAJ heat shock family protein (.1) AT5G01390 343 / 5e-118 DNAJ heat shock family protein (.1.2.3.4) AT5G25530 328 / 1e-111 DNAJ heat shock family protein (.1) AT4G28480 234 / 9e-75 DNAJ heat shock family protein (.1.2) AT2G20550 230 / 3e-74 HSP40/DnaJ peptide-binding protein (.1.2) AT1G11040 164 / 6e-47 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013280 [exp] 558 / 0 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10036668 [exp] 388 / 3e-135 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10005033 [exp] 362 / 5e-125 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 360 / 3e-124 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 358 / 2e-123 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 352 / 6e-121 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10017687 [exp] 350 / 2e-120 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 340 / 7e-117 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 335 / 7e-115 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194000 [exp] 440 / 2e-156 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 437 / 4e-155 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 380 / 3e-132 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 352 / 4e-121 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 351 / 8e-121 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 350 / 2e-120 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 347 / 4e-119 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 343 / 9e-118 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 330 / 3e-112 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 326 / 5e-111 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030803 pacid=23155239 polypeptide=Lus10030803 locus=Lus10030803.g ID=Lus10030803.BGIv1.0 annot-version=v1.0 ATGGGAGTGGATTACTACAAAGTGCTCAAGGTTCCCAAGACGGCGACGGAGGACGATCTGAAGAAATCGTACCGCCGGCTAGCGATGAGGTGGCACCCGG ACAAGAACCCGGCGGTTAACAAGAAGGAAGCCGAGGCCAAGTTCAAGCAGGTCTCTGAAGCTTACGACGTCCTCAGCGACGCACAGAAGCGGCAGATCTA CGATCTCTACGGCGAGGAAGGTCTTAAGACGTTCGATTTTCCCCCGCCGGACGACATCCCTTCCGGCGATTCGAAATTCAGGTTCAATCCCCGCGACGCC GAGGATATATTCGCGGAATTCTTCGCTGGATCTGGAGCTGCAAGTGGCGGGAAGAGTAATCATACTCATAACCATAATAATCAGAGCCGTAATCACAATC AGACTCGCAGTGGTCATCGGAGTAACAATAATAAGAAAGCTCCGGCGATTGAGAGTAAACTGGCGTGTAGCTTGGAGGAGCTCTATAAAGGTACCAGGAG GAAGATGAAGATTTCCCGCAATGTTCCTGACGAATTCGGAAAGCCAAAGGCAGTGGAAGAGATCCTGAAGATAGACATAAAACCAGGGTGGAAGAAAGGA ACAAAGATAACATTCCCAGAGAAGGGAAATCAGGAGCCGGGTTTTACAACTCCGTCCGATCTAATATTCGTTGTGGACGAAAAGCCGCACGCTTTGTACA AACGAGATGGAAATGACCTAGTCGTTCATCAGAAGGTCTCCCTGCTCGAAGCTCTGACAGGGAAGACTGTGGAGCTGACTACATTGGATGGAAGAAGCCT CACCGTTCCGGTGACTGATGTCATTAAACCGGGGCATGAAGTTGTGATCTCGAACGAAGGAATGCCAGTTTCGAAAGAGCCTAACAACAGAGGGAGCTTG AGGATCAAGTTCGATGTCAAGTTCCCTTCGAGGTTGAGTGCTGAGCAGAAGTCTGATCTGAAACGGGTGTTTGGAGAGTAA
AA sequence Show only first row Show all	>Lus10030803 pacid=23155239 polypeptide=Lus10030803 locus=Lus10030803.g ID=Lus10030803.BGIv1.0 annot-version=v1.0 MGVDYYKVLKVPKTATEDDLKKSYRRLAMRWHPDKNPAVNKKEAEAKFKQVSEAYDVLSDAQKRQIYDLYGEEGLKTFDFPPPDDIPSGDSKFRFNPRDA EDIFAEFFAGSGAASGGKSNHTHNHNNQSRNHNQTRSGHRSNNNKKAPAIESKLACSLEELYKGTRRKMKISRNVPDEFGKPKAVEEILKIDIKPGWKKG TKITFPEKGNQEPGFTTPSDLIFVVDEKPHALYKRDGNDLVVHQKVSLLEALTGKTVELTTLDGRSLTVPVTDVIKPGHEVVISNEGMPVSKEPNNRGSL RIKFDVKFPSRLSAEQKSDLKRVFGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10350			DNAJ heat shock family protein...		Lus10030803 [exp]	0	1
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	1.4	0.9102
AT4G40070			RING/U-box superfamily protein...		Lus10034157 [exp]	7.2	0.8761
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	9.3	0.8678
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	10.9	0.8486
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10038488 [exp]	11.7	0.8174
AT3G18500			DNAse I-like superfamily prote...		Lus10036357 [exp]	12.0	0.8341
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	12.7	0.8506
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	13.7	0.8477
					Lus10024153 [exp]	14.7	0.8314
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	16.1	0.8470

Compare expression of checked genes

Lus10030803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.