Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59710 336 / 4e-116 Protein of unknown function (DUF569) (.1) AT1G27100 290 / 3e-95 Actin cross-linking protein (.1) AT1G69890 279 / 7e-94 Protein of unknown function (DUF569) (.1) AT3G28630 276 / 6e-92 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT3G01311 244 / 4e-80 Protein of unknown function (DUF569) (.1) AT1G69900 178 / 5e-53 Actin cross-linking protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013281 [exp] 368 / 8e-130 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 346 / 6e-120 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10001124 [exp] 263 / 2e-86 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10015346 [exp] 261 / 8e-86 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10037230 [exp] 195 / 2e-59 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10036693 [exp] 155 / 2e-46 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 116 / 2e-30 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036692 [exp] 40 / 0.0002 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035100 [exp] 394 / 2e-135 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 367 / 7e-125 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1) Potri.004G130200 [exp] 289 / 5e-95 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1) Potri.017G075900 [exp] 279 / 2e-91 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF04601 [flax] [poplar] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Lus10030804 pacid=23155308 polypeptide=Lus10030804 locus=Lus10030804.g ID=Lus10030804.BGIv1.0 annot-version=v1.0 ATGGAGTTTTTCAACAAGGCCAAAGCAGTCCGCCTCCGGAGCCACCACGAGAAGTACCTCCTCGCTCACGACGACGAGGAATCCATCATTCAGGACAAGA ATGGATCGTCCAAATCCGCTAAATGGGTCGTCGAGCCCGTACCCGGATCCGACTCCGCGATCCGGTTGAAATCCGTCCACGGGAAATACTTGACGGCTTC AAACCACCCTTTCCTTTTGGGGATGACCGGACGGAAGGTCCTGCAGACTCTTCCCCGGCGGCTGGACTCGTCGGTGGAGTGGGAGCCGGTCAGGGAAGGG TACAGTGCCCGGATCAGGCTAAAGACACGGTACGGCAATTTCCTGAGGGCGAACGGGAGGTTGCCGCCGTGGAGGAACTCCGTTACTCATGATATTCCTC ACCGGACGAGTACGCAGGACTGGATTGTTTGGGATGTTGATGTTGTTGAGATTCGCGAGACTGAAAAGTCAACGCCGGCGGCGGCGGAGATGAAGCAGCT GGATCATGTGGATTCGTTGGATTTCGAGGAAACGGGCTCGCCGGCTTACTCTGTTTCTGATAGGCCTCCGGTTACTTTTGAGAGATTGGAGTCGACTGAT TCGAATGTGGGATCACCACCGAAGACGGAAGGGAGGACGATATACTATCACATGGCAGACGAGAGCGGAGATGTGGACGACGACGTGGAGGAAGGGTATT CGATGAGTTTCAAAGGTAACGGGGTCGAAGAGCTGACCGAAAAGTTGAAGGAAGTGACCGGGTTGGGCGAGATAGTGGTGTGTTCAAGGAGCCCTTTGAA TGGAAAGCTCTACCCTCTCCGATTGCAGCTTCCTCCTAACAATGCCGATATGCATGTCATTGTGGTTCCTTCCTCTTCCAAAGATTGA
AA sequence Show only first row Show all	>Lus10030804 pacid=23155308 polypeptide=Lus10030804 locus=Lus10030804.g ID=Lus10030804.BGIv1.0 annot-version=v1.0 MEFFNKAKAVRLRSHHEKYLLAHDDEESIIQDKNGSSKSAKWVVEPVPGSDSAIRLKSVHGKYLTASNHPFLLGMTGRKVLQTLPRRLDSSVEWEPVREG YSARIRLKTRYGNFLRANGRLPPWRNSVTHDIPHRTSTQDWIVWDVDVVEIRETEKSTPAAAEMKQLDHVDSLDFEETGSPAYSVSDRPPVTFERLESTD SNVGSPPKTEGRTIYYHMADESGDVDDDVEEGYSMSFKGNGVEELTEKLKEVTGLGEIVVCSRSPLNGKLYPLRLQLPPNNADMHVIVVPSSSKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	0	1
AT5G39670			Calcium-binding EF-hand family...		Lus10007536 [exp]	1.0	0.9206
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	1.4	0.9073
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	2.8	0.9018
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	3.2	0.9000
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	6.7	0.8842
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	7.5	0.8590
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	7.5	0.9054
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	8.1	0.8776
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	8.9	0.8835
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	9.2	0.8781

Compare expression of checked genes

Lus10030804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.