Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10370 290 / 6e-100 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT1G10360 275 / 4e-94 GST29, ATGSTU18 GLUTATHIONE S-TRANSFERASE 29, glutathione S-transferase TAU 18 (.1) AT1G59700 253 / 2e-85 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT1G59670 235 / 3e-78 ATGSTU15 glutathione S-transferase TAU 15 (.1) AT1G69930 227 / 5e-75 ATGSTU11 glutathione S-transferase TAU 11 (.1) AT1G27130 216 / 9e-71 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT1G27140 199 / 7e-64 GST13, ATGSTU14 GLUTATHIONE S-TRANSFERASE 13, glutathione S-transferase tau 14 (.1) AT1G69920 198 / 1e-63 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT3G09270 170 / 5e-53 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29490 162 / 1e-49 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030806 [exp] 351 / 4e-124 AT1G10370 290 / 4e-100 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10037234 [exp] 328 / 4e-115 AT1G10370 285 / 2e-98 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10036688 [exp] 325 / 9e-114 AT1G10370 281 / 1e-96 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10013282 [exp] 287 / 2e-99 AT1G10370 229 / 2e-76 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10016469 [exp] 179 / 2e-56 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 179 / 3e-56 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10042468 [exp] 171 / 2e-53 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10007897 [exp] 169 / 2e-52 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040727 [exp] 167 / 1e-51 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035500 [exp] 308 / 4e-107 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.010G032800 [exp] 307 / 8e-107 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.008G175100 [exp] 178 / 3e-56 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 168 / 5e-52 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G060900 [exp] 165 / 8e-51 AT2G29420 175 / 7e-55 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 163 / 4e-50 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061100 [exp] 159 / 8e-49 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Potri.012G052200 [exp] 159 / 1e-48 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023200 [exp] 157 / 1e-47 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 154 / 1e-46 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030805 pacid=23155205 polypeptide=Lus10030805 locus=Lus10030805.g ID=Lus10030805.BGIv1.0 annot-version=v1.0 ATGGCAGCCAACAAGAGCGACGTGAAGTTGATCGGAGCCTGGCCGAGCCCCTTCGTGATGCGTCCCCGAATCGCACTCAACCTCAAATCGGTCGAGTACG ATTTCCTAGAGGAGCAATTCGGCTCCAAGAGCGAGCTCCTGCTGAAATCGAACCCTGTCCACAAGAAGATCCCGGTCCTTCTCCACAAGGACAGACCTAT CTGCGAGTCCAGCATCATCGTCGAGTACATTGATGAGGTCTGGTCTACGTCTGGCCCTTCGATTTTACCGTCCGATCCTTACGATCGCGCCATCGCACGG TTCTGGGCTGCCTACATCGATGAAAAGTGGTTCCCAAACATAAGGGCAGCACCCCTAGCACCAACCGAGGAGGCCAAAACTACGGCGGTGGACCAATTGC TCGAAGGACTCGCTCTGCTCGAACAAGCTTACAAGGACATCAGCAAGGGCAAAGACTTCTTCGGAGGCGACAGGATCGGGTTCCTCGACATTGCCCTCGG GAGCATGCTGAGCTGGATGAGAGGTTTGCAGGTGATGATTGGAGTGAAGCTACTTGACGAGGAGAAAACACCTGGTCTGGTGAAGTGGTCGGAAAAGTTT GCGGCGGATCCTGCTGTTAAGGATGTCCTGCCTGAGACTGAGAAGATCGTCGGGTTTGCCAAGGTTCTTGTCGCCAAACTCAAAGGTGCCTCAGCTTAA
AA sequence Show only first row Show all	>Lus10030805 pacid=23155205 polypeptide=Lus10030805 locus=Lus10030805.g ID=Lus10030805.BGIv1.0 annot-version=v1.0 MAANKSDVKLIGAWPSPFVMRPRIALNLKSVEYDFLEEQFGSKSELLLKSNPVHKKIPVLLHKDRPICESSIIVEYIDEVWSTSGPSILPSDPYDRAIAR FWAAYIDEKWFPNIRAAPLAPTEEAKTTAVDQLLEGLALLEQAYKDISKGKDFFGGDRIGFLDIALGSMLSWMRGLQVMIGVKLLDEEKTPGLVKWSEKF AADPAVKDVLPETEKIVGFAKVLVAKLKGASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030805 [exp]	0	1
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10030929 [exp]	2.4	0.9760
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009137 [exp]	2.8	0.9790
AT2G47485			unknown protein		Lus10009156 [exp]	3.5	0.9777
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	4.5	0.9798
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	4.9	0.9784
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10026949 [exp]	7.1	0.9634
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10035333 [exp]	11.8	0.9607
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	14.7	0.9777
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10037425 [exp]	14.7	0.9518
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	15.7	0.9758

Compare expression of checked genes

Lus10030805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.