Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59640 284 / 2e-96 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G62610 204 / 3e-65 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G07340 160 / 2e-46 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 160 / 6e-46 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 155 / 2e-44 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G23690 152 / 8e-44 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10120 149 / 1e-42 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 148 / 1e-42 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT5G50915 144 / 2e-41 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G34530 144 / 4e-41 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013284 [exp] 476 / 1e-172 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10033120 [exp] 243 / 2e-80 AT5G62610 265 / 9e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036659 [exp] 233 / 2e-76 AT5G62610 256 / 3e-85 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 164 / 2e-47 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 162 / 2e-46 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 155 / 2e-45 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002337 [exp] 154 / 4e-44 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023562 [exp] 149 / 4e-43 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 147 / 2e-42 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040000 [exp] 306 / 6e-106 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.008G190800 [exp] 273 / 2e-92 AT1G59640 230 / 2e-75 BIG PETAL UB, BIG PETAL P (.1.2) Potri.012G072700 [exp] 258 / 2e-86 AT5G62610 228 / 4e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G068100 [exp] 248 / 2e-82 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 172 / 6e-50 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 163 / 1e-46 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 162 / 3e-46 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 159 / 3e-45 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G121850 [exp] 153 / 5e-44 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.005G146500 [exp] 150 / 7e-43 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030807 pacid=23155335 polypeptide=Lus10030807 locus=Lus10030807.g ID=Lus10030807.BGIv1.0 annot-version=v1.0 ATGGATCCGCGCGGGTTAATGAACGACGAGTCGTTTAACCTGGCGGAGATCTGGCAGTTTCCGCTGAATGGGAGTGGGAGGGGTCAGTTTGGGCAGAGCT TGGCTCATTTTGCTGACTCTACTACTGGTAGGGATAGTGATCTGGTCAATTTGGAATCCAGAGGTGGGTTGAGGAAGCGATTGAATTTGGAGAATGAGTC TGGGAAGGGTGTGTCTACTAGCAATGGCAATGGGAGCGGGAATGGATTGAGTGAGAGTGATGGGAAACGGCTAAAAAGATCAGCTAGTAGAGATGATAAT TGCGAGTCCAAAGTTGAAACAGAAGAACTCAGTTCAGGGAAGCCAGTGGAACAAAAGGGTCAACCGTCGGAGCCTCCTAAACAGGATTACATTCACGTTC GAGCTAGGCGAGGTCAAGCTACTGATAGCCACAGCCTAGCAGAAAGAGCAAGGAGAGAAAAAATCAGTGAAAGGATGAAGATTCTTCAGGATCTAGTCCC TGGTTGCAACAAGGTAATTGGCAAAGCTCTCGTCCTTGATGAGATTATCAATTATGTCCAATCGTTACAGCGTCAAGTTGAGTTCCTGTCAATGAAGCTA GAGGCAGTTAATTCCAGGGTGACTCCAGGAATCGATGTCTATCCTTCTAAAGACTTTGGCCAACAAACATTCGATACTTCCGGAATGGCTTATGGTTCAC AAACCACAAGGGAATATAGCCGAGGAGCTTCGCCAGAATGGTTGCACATGCAGATCGGTAGCGGTTTCGAAAGAACATCATGA
AA sequence Show only first row Show all	>Lus10030807 pacid=23155335 polypeptide=Lus10030807 locus=Lus10030807.g ID=Lus10030807.BGIv1.0 annot-version=v1.0 MDPRGLMNDESFNLAEIWQFPLNGSGRGQFGQSLAHFADSTTGRDSDLVNLESRGGLRKRLNLENESGKGVSTSNGNGSGNGLSESDGKRLKRSASRDDN CESKVETEELSSGKPVEQKGQPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYVQSLQRQVEFLSMKL EAVNSRVTPGIDVYPSKDFGQQTFDTSGMAYGSQTTREYSRGASPEWLHMQIGSGFERTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	0	1
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10013284 [exp]	1.0	0.8411
AT1G76190			SAUR-like auxin-responsive pro...		Lus10021825 [exp]	1.4	0.7932
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	4.5	0.7522
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	5.2	0.7602
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	8.8	0.7239
					Lus10007307 [exp]	11.4	0.7348
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	11.5	0.7209
AT1G68490			unknown protein		Lus10041444 [exp]	12.2	0.6423
AT5G02930			F-box/RNI-like superfamily pro...		Lus10027244 [exp]	14.4	0.6014
AT5G66440			unknown protein		Lus10024273 [exp]	18.4	0.6589

Compare expression of checked genes

Lus10030807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.