Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69935 75 / 7e-17 SHW1 short hypocotyl in white light1 (.1) AT4G33780 68 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013285 [exp] 216 / 8e-72 AT1G69935 110 / 1e-30 short hypocotyl in white light1 (.1) Lus10035665 [exp] 73 / 9e-16 AT4G33780 157 / 2e-48 unknown protein Lus10037250 [exp] 58 / 4e-10 AT4G33780 150 / 9e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G190900 [exp] 102 / 4e-27 AT1G69935 91 / 1e-22 short hypocotyl in white light1 (.1) Potri.001G289600 [exp] 68 / 5e-14 AT4G33780 150 / 9e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030808 pacid=23155225 polypeptide=Lus10030808 locus=Lus10030808.g ID=Lus10030808.BGIv1.0 annot-version=v1.0 ATGATGCTAAAGCTTGCAGCTCCGCTTCCCTCCCCATCCCTCCATCTCCGGCGATCCGCCGCAAATCTCCCCCGCCGCCCTCCAACCCTCTCCTCTTCTC TCCTCCCCCACCGCAAAACCATTACAACCGTCATTTGCCACGGCAAGTTGGACGGCTTGTACGGAGAGAATCCAGACCCAGTTGAGAAGGGAACCGAAGC TTTCTTTGAAGCGATTATGGGAGGAGGAATTGACGACGATGATGATGGATTTGATGATTATGATGGTGATGAAGAAGAAGAGACAGAGAGCAGTATCGAT TTGTTCATCAGATTCTTGCAGAGCTCGCTGAAGAAAGTTTCCAGGCGTGCTAAAAGAGCTTCTCGCTCTGTTCTCCCTTCTGTCATCTCCCCACAATTGG TTTCATTTGCGGTTGATGGGGTGCTGATTCTGACTGTACTCTTCATTTTCAAATCACTTCTTCAGGTGTTTTGCACCCTTGGAAGCACTGTTTTCGCCAC GATACTGCTCGTTCAGGTTGTCTGGGCAGTGCTTTCCTACTTCCAATCGAATGGGAATGATGGCAGAAGATCCTCCTCTGGTACTAGACAGGCAGTAATA TAA
AA sequence Show only first row Show all	>Lus10030808 pacid=23155225 polypeptide=Lus10030808 locus=Lus10030808.g ID=Lus10030808.BGIv1.0 annot-version=v1.0 MMLKLAAPLPSPSLHLRRSAANLPRRPPTLSSSLLPHRKTITTVICHGKLDGLYGENPDPVEKGTEAFFEAIMGGGIDDDDDGFDDYDGDEEEETESSID LFIRFLQSSLKKVSRRAKRASRSVLPSVISPQLVSFAVDGVLILTVLFIFKSLLQVFCTLGSTVFATILLVQVVWAVLSYFQSNGNDGRRSSSGTRQAVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69935		SHW1	short hypocotyl in white light...		Lus10030808 [exp]	0	1
AT1G56180			unknown protein		Lus10006532 [exp]	5.2	0.8904
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	9.7	0.8816
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	13.6	0.8797
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031131 [exp]	14.4	0.8739
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031710 [exp]	14.8	0.8794
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10015317 [exp]	16.0	0.8786
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10028569 [exp]	17.7	0.8739
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	22.7	0.8696
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	24.8	0.8628
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	25.6	0.8785

Compare expression of checked genes

Lus10030808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.