Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59820 1888 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT3G25610 928 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 926 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 918 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G26130 917 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G17500 915 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 903 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 902 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 894 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 889 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013286 [exp] 2344 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10036682 [exp] 2129 / 0 AT1G59820 1990 / 0.0 aminophospholipid ATPase 3 (.1) Lus10010737 [exp] 1054 / 0 AT1G59820 827 / 0.0 aminophospholipid ATPase 3 (.1) Lus10019152 [exp] 954 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 910 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 903 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 899 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 894 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 892 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G039900 [exp] 2050 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 2014 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.010G132700 [exp] 943 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 939 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 926 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 897 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 884 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 855 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 838 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G109200 [exp] 625 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10030809 pacid=23155390 polypeptide=Lus10030809 locus=Lus10030809.g ID=Lus10030809.BGIv1.0 annot-version=v1.0 ATGAGCGGCAGTGGAGGAGGATGGGAGAGGATAAGGTCAACGAGAGGAGGGAGGTTGTCGAGAGATGTGAGTTTGACGGGTCGAACGACGAGGACGGTGA GGCTAGGCCGTGTGCAGCCGCAGGCGCCTGGTTACCGGACAATCTTCTGTAATGATCGGGAGGCGAATCTCCCAGTCCGATTCAAGGGAAACTCTGTATC GACTACAAAGTACAACTTTTTAACCTTTCTACCGAAAGGGTTGTTTGAACAGTTCAGACGGGTGGCTAACTGCTACTTTCTCTTGATCTCTATTCTCTCT ATGACACCTATCAGTCCGGTTAATCCAGTGACAAACGTTGTCCCGCTTAGCTTGGTGCTTTTTGTTTCTCTTGTAAAGGAGGCATTTGAGGACTGGAAAC GCTTGCAGAATGATATGGTGATAAACAATAATCCTGTAGATGTGCTCCAAGATCAGCGATGGGTAACTATTCCTTGGAAGAAATTGCAGGTTGGAGACAT TGTTAGGATTAAGCAGGATGGATTCTTTCCTGCAGATTTGCTTTTCCTAGCTAGTACAAATGCAGATGGTGTCTGTTATATTGAGACTTCAAACTTGGAT GGTGAAACAAACTTGAAGATTAGAAAAGCAGTTGAAAGGACTTGGGATTATTTGACTCCAGAGAAAGCTGTTGAATTTAAAGGTGAAGTGCAGTGTGAGC AGCCGAATAATTCCCTATATACCTTCACTGGCAATCTTATTATTGAGAACCAAACACTTCCTCTCTCCCCAAACCAGCTTTTGCTTAGGGGTTGCAGTCT AAGGAATACTGAATACATTGTAGCGGCTGTTATATTCACTGGTCATGAAACAAAGGTAATGATGAACTCTATGAATGTTCCTTCTAAACGGAGTACGTTG GAGAGGAAACTTGACAAACTTATTCTTGCGCTCTTCGGAACACTCTTCGCAATGTGCCTTATTGGAGCCATAGGAAGTGGAATATTCATAAGTAGTGACT ACTACTACCTAGAGTTAAAAAGAGGAGTAGGATTGGAGTTTGACCCGACCAGCCGTCTTTCGGTTGCCATCCTGACACTATTTACCCTGATCACTCTATA TTCAACAATCATTCCTATCTCTTTATACGTCTCCATTGAGATGATCAAGTTTATCCAGTGTGCTCAGTTTATCAACAAGGATTTGCATATGTATCATGTT GAAAGCAACACCCCAGCATTGGCTCGGACTTCGAATTTGAACGAGGAACTTGGGCAGGTTGAATTCATATTCTCGGACAAAACTGGAACCTTGACAAGGA ATTTAATGGAGTTCTTCAAGTGTTCAATTGGAGGAGAGGTTTATGGAACTGGCATCACTGAGATAGAGCTGGGAGGGGCACAAAGGACCGGTGCCAAAAT TCAAGATGTGCTGATTCCAGATCCTGCGCCAAGATCATCCCAGACTGTTCGTGAGAAAGGGTTCAATTTTGATGATTCTAAGATCATGAGGGGTGCTTGG AGGAATGAGCCTAATCCGGACATGTGTAAGGAATTTTTCAGATGCCTTGCTATATGCCATACTGTACTTACTGAAGGTGATGAGTCCCCTGACAAGATTA CATACCAAGCTGCATCTCCTGACGAGGCTGCTCTTGTCACTGCTGCAAAAAATTTTGGTTTCTTCTTTTACAGACGTACACCTACTATGATATATGTCCG TGAGTCTCACGCAGAGAAGATGGGAACTGTTACTGATGTTCCATACGAGATTCTGAATGTTCTCGAGTTCAACAGCACGAGGAAGCGACAGTCTGTTGTT TGTAGATATCCCGATGGTAGACTCGTATTGTACTGCAAGGGTGCTGATACTGTAATCTACGAAAGATTGGCTAATGGAAATGATGGCCTTAAGAAGATAA CTCGGGAACACTTGGAAAAATTTGGATCAGCTGGATTGCGTACTCTCTGCCTTGCCTATAAAGATTTACAGCCGGAAACATATGAAAGCTGGAATGAGAA TTTTATCCAATCTAAATCTTCTCTTAGAGACCGTGAAAAGAAGCTAGACGAGGTAGCTGAACTTATAGAGAAGGATCTTATCTTAATTGGGTCGACAGCT ATAGAAGACAAACTTCAAGAAGGTGTACCAGCTTGTATTGAGACGCTTTCTAAAGCTGGAATTAAGATTTGGGTCCTGACAGGGGACAAAATGGAAACTG CCATAAATATTGCTTACGCTTGCAACTTGATTAACAATGATATGAAACAGTTCGTTATTAGTTCAGAAACTGATGCTATTCGAGATGTAGAAGAAAAGGG TGACCAGGTAGAAATTGCACGGTTTATGAAAGAAGAAGTCAAAAGAGAGCTCAAAAGGTGTCTTGAAGAAGCACAGCACTCTTTGCGCACTGTAGCTGGA CCAAAGTTGGCACTCATCATAGATGGAAAATGTTTGATGTATGCATTGGACCCAACCTTGCGAGTAATGCTGCTGAATTTGAGTCTGAACTGCAATTCTG TGGTTTGTTGTCGGGTTTCCCCTTTACAGAAAGCTCAGGTTACCAGTCTGGTCAAGAAAGGTGCAAAGAAGATAACCCTTAGCATTGGTGATGGTGCTAA TGATGTTAGCATGATTCAAGCTGCTCATATCGGTGTCGGAATAAGTGGGATGGAGGGTATGCAAGCAGTCATGGCTAGTGACTTTGCGATTGCCCAGTTC CGGTTCCTAACGGATTTACTTCTCGTTCATGGACGGTGGTCTTACCTCAGGATATGCAAGGTCATCACGTACTTCTTTTACAAGAATCTTACCTTCACCC TCACGCAATTTTGGTTCACCTTTTACACTGGTTTCTCTGGTCAAAGATTTTATGACGATTGGTTCCAGTCCTTGTATAATGTTATCTTTACTGCTCTTCC TGATGTTAGTTCGTCGTTGTCGAAGAAGTACCCTCAACTGTACAAGGAGGGAATAAAGAACATGTTCTTCAAATGGCGAGTTGTGGGGACATGGGCTTTC TTCTCCGTCTACCAATCTCTCATCTTTTATCACTTTGTGACGATTTCAGCCACGAGTGGTAAGAATTCGTCGGGGAGGATGTTTGGACTGTGGGATGTCA GCACGTTGGCCTTCACCTGTGTCGTAATCACTGTCAATTTGCGGCTTATAATGATGTGCAATTCGATCACAAGATGGCATTACATTAGTGTCGGAGGAAG TATTCTCGCATGGTTTGTCTTCATCCTTATATACTCGCTTCTACGGGAGAATGTTTTCTTTGTGATTTATGTTCTTATGGGAACATTCTACTTTTACCTC ACCATTATTCTTGTCCCTATCGTAGCCCTTCTCGGAGACTTCATCTATCAAGGGGTCGAGAGGTGGTTCTTCCCATACGACTACCAAATCGTACAAGAAA TGCACAAGGACGACCCCGAAGACAACTCGAGGACCGGATTGCTGGAGATAGGCAATCGACTCACCCCACAGGAGGAAAGAAGCTTCGCCGTAGCTCAACT TCCACGAGAGCTATCGAAACACACGGGATTTGCGTTCGATTCCCCCGGTTACGAGTCGTTCTTCGCGGGCCAGCTCGGTATCCACGCTCCCCAGAAGGCA TGGGACGTTGCCAGAAGAGCCAGCATGCGTGGGAAGCCCAAAGAATCAAAGAAGCACTGA
AA sequence Show only first row Show all	>Lus10030809 pacid=23155390 polypeptide=Lus10030809 locus=Lus10030809.g ID=Lus10030809.BGIv1.0 annot-version=v1.0 MSGSGGGWERIRSTRGGRLSRDVSLTGRTTRTVRLGRVQPQAPGYRTIFCNDREANLPVRFKGNSVSTTKYNFLTFLPKGLFEQFRRVANCYFLLISILS MTPISPVNPVTNVVPLSLVLFVSLVKEAFEDWKRLQNDMVINNNPVDVLQDQRWVTIPWKKLQVGDIVRIKQDGFFPADLLFLASTNADGVCYIETSNLD GETNLKIRKAVERTWDYLTPEKAVEFKGEVQCEQPNNSLYTFTGNLIIENQTLPLSPNQLLLRGCSLRNTEYIVAAVIFTGHETKVMMNSMNVPSKRSTL ERKLDKLILALFGTLFAMCLIGAIGSGIFISSDYYYLELKRGVGLEFDPTSRLSVAILTLFTLITLYSTIIPISLYVSIEMIKFIQCAQFINKDLHMYHV ESNTPALARTSNLNEELGQVEFIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIELGGAQRTGAKIQDVLIPDPAPRSSQTVREKGFNFDDSKIMRGAW RNEPNPDMCKEFFRCLAICHTVLTEGDESPDKITYQAASPDEAALVTAAKNFGFFFYRRTPTMIYVRESHAEKMGTVTDVPYEILNVLEFNSTRKRQSVV CRYPDGRLVLYCKGADTVIYERLANGNDGLKKITREHLEKFGSAGLRTLCLAYKDLQPETYESWNENFIQSKSSLRDREKKLDEVAELIEKDLILIGSTA IEDKLQEGVPACIETLSKAGIKIWVLTGDKMETAINIAYACNLINNDMKQFVISSETDAIRDVEEKGDQVEIARFMKEEVKRELKRCLEEAQHSLRTVAG PKLALIIDGKCLMYALDPTLRVMLLNLSLNCNSVVCCRVSPLQKAQVTSLVKKGAKKITLSIGDGANDVSMIQAAHIGVGISGMEGMQAVMASDFAIAQF RFLTDLLLVHGRWSYLRICKVITYFFYKNLTFTLTQFWFTFYTGFSGQRFYDDWFQSLYNVIFTALPDVSSSLSKKYPQLYKEGIKNMFFKWRVVGTWAF FSVYQSLIFYHFVTISATSGKNSSGRMFGLWDVSTLAFTCVVITVNLRLIMMCNSITRWHYISVGGSILAWFVFILIYSLLRENVFFVIYVLMGTFYFYL TIILVPIVALLGDFIYQGVERWFFPYDYQIVQEMHKDDPEDNSRTGLLEIGNRLTPQEERSFAVAQLPRELSKHTGFAFDSPGYESFFAGQLGIHAPQKA WDVARRASMRGKPKESKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	0	1
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	1.0	0.8825
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	5.3	0.8282
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	6.2	0.8358
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	8.9	0.7597
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	10.2	0.8324
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	11.5	0.7057
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	12.5	0.7526
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	18.3	0.7797
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	18.4	0.7580
AT5G23490			unknown protein		Lus10004286 [exp]	19.8	0.7488

Compare expression of checked genes

Lus10030809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.