Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27190 731 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 700 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 624 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 446 / 7e-150 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G13380 298 / 1e-88 BRL3 BRI1-like 3 (.1) AT1G55610 295 / 1e-87 BRL1 BRI1 like (.1.2) AT5G07280 291 / 4e-86 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 285 / 1e-83 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62710 272 / 5e-83 Leucine-rich repeat protein kinase family protein (.1) AT2G01950 274 / 5e-80 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013288 [exp] 553 / 0 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10008743 [exp] 448 / 8e-151 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 439 / 8e-147 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030812 [exp] 339 / 4e-113 AT3G28450 252 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) Lus10005784 [exp] 293 / 1e-86 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10016395 [exp] 291 / 2e-86 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 290 / 1e-85 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 288 / 4e-85 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 280 / 4e-82 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081700 [exp] 808 / 0 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 803 / 0 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G074400 [exp] 726 / 0 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 724 / 0 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G240000 [exp] 481 / 2e-163 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 476 / 2e-161 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 462 / 2e-156 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 456 / 7e-154 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 355 / 3e-114 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 346 / 1e-111 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10030811 pacid=23155349 polypeptide=Lus10030811 locus=Lus10030811.g ID=Lus10030811.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTAAAGATGTCGTCTTTCTCCTCGATCCTGCTCCTGACGACGACTTCTCTCCTTCTCTTCGTCGCCTCCGCCATCGAAGACGACCTCATGT GCTTAGAAGGCGTGAAGAAGGCGCTCGATCCTCAGAACCAGCTCAACTGGAACCTCAACAACAACTCCGTCGGCGCCGTCTGCCAGCTCAACGGCGTCAC CTGCTGGAACGAGCGAGAGAATCGGATCATCAACCTCCAGCTCCCTGACTTCCAGCTCGCCGGTCAACTCCCTGACTCGCTCAAGTACTGCAAGAGCCTC CAGTCCTTGGATCTCTCAAACAACGCTCTATCCGGAAGCTTACCTCCGCAAATCTGCAGCTGGCTCCCTTTCGTTGTGACGTTAGATCTCTCAAGTAACT CTCTCACCGGCTCCATACCTCCAGAGATCGTCAACTGTAAGTTTCTCAACAACTTAATTCTGAACGATAACAAGCTCTCCGGGTCGATCCCTTACGGTCT AGGTCGGTTGGACCGGCTGAAGAAGTTTTCCGTTGCGAACAACGAACTCTCCGGGTCGATTCCGGCGGATCTGGCCACTTTCCCTGAGGAAGATTTCGCA GGGAACGGGAAGCTGTGCGGTCGGCCGTTGGGGAAGTGCGGCGGATTGAGTAGTAAGAGCTTAGGGATTATCATCGCTGCAGGTGTTGTTGGAGCTACTG GCTCGTTAGTTCTAGGGTTTGCGATTTGGTGGTGGCTATTTGGCAAGAGATCGAAGAAGGCAGGAGCTAGGAAAGACGAGTCAAGCTGGATTGAGCTTCT CAGGTCTCACAAACTCGTCCAGGTTTCGCTATTCCAAAAGCCGATCAACAAGATTAAGCTCTACGATTTGATTGTGGCGACGAACAATTTCGAGTTCGAG AACATCATCATTTCCACAAGAACTGGTGTCTCTTACAAGGCTGTTCTCCCCGATGGGTCAGCTCTAGCGGTGAAGAGACTCAGCGGCTCTTCCAAGCTCA ACGAGAAGCAGTTCAGGTCCGAGATGAACAGGCTAGGACAGTTACGCCACCCGAATTTGGTTCCATTGTTGGGATTCTGCGCTGTGGAGGAAGAAAGGTT ACTCGTTTACAAGCATATGACTGGCGGGACTCTGTATTCTCAGCTGCACGGGTCTGGTTTCGGAATCGGAACACAACCCTGCTCGATTGATTGGCCGACA AGGTTACGAATCGGCCTCGGAGCAGCTAGAGGCCTCGCCTGGCTTCACCATGGATGCCAGCCACCTTACGTTCATCAATACATGAGCTCGAACGTCATCC TTCTCGACGACGATTTTGACGCCAGGGTGGCAGATTTCGGGCTGGCAAGGCTGGTTGCTACTCGCGACTCGAACGACAGCTCCTTCAACGGAGATTTGGG CGAGTTCGGGTACATCCCTCCCGAGTATTCGAGCACGATGGTAGCATCTTTAAAAGGCGACGTCTACGGATTCGGAGTTGTGCTTCTCGAATTGGTCACA GGGCAGAAGCCGTTGGATGTTGTGAACATTAACGCTGATGAAGCGTTCAAAGGCAACTTAGTCGATTGGGTGAACAGCCTTGTGATCGCTGGCCGGAGCA AAGACTGCATCGATAAATCGTTGGTTGGCAAGGGCCACGATGAGGAGATCACTCAGTGCTTGAAGGTGGCACTGAACTGCGTGGGTTCGAGACCCAAGGA TAGGCAGCCGATGTACCGAGTTTACGAGTCATTGAAGGCGTTGGCGGAGAAACATGGACCGAACGAGCAGTATGATGAGTTCCCTCTGGTGTTTGGTAAG CAAGAAGGTGGTGAATTGAAGGAGTAA
AA sequence Show only first row Show all	>Lus10030811 pacid=23155349 polypeptide=Lus10030811 locus=Lus10030811.g ID=Lus10030811.BGIv1.0 annot-version=v1.0 MEKLKMSSFSSILLLTTTSLLLFVASAIEDDLMCLEGVKKALDPQNQLNWNLNNNSVGAVCQLNGVTCWNERENRIINLQLPDFQLAGQLPDSLKYCKSL QSLDLSNNALSGSLPPQICSWLPFVVTLDLSSNSLTGSIPPEIVNCKFLNNLILNDNKLSGSIPYGLGRLDRLKKFSVANNELSGSIPADLATFPEEDFA GNGKLCGRPLGKCGGLSSKSLGIIIAAGVVGATGSLVLGFAIWWWLFGKRSKKAGARKDESSWIELLRSHKLVQVSLFQKPINKIKLYDLIVATNNFEFE NIIISTRTGVSYKAVLPDGSALAVKRLSGSSKLNEKQFRSEMNRLGQLRHPNLVPLLGFCAVEEERLLVYKHMTGGTLYSQLHGSGFGIGTQPCSIDWPT RLRIGLGAARGLAWLHHGCQPPYVHQYMSSNVILLDDDFDARVADFGLARLVATRDSNDSSFNGDLGEFGYIPPEYSSTMVASLKGDVYGFGVVLLELVT GQKPLDVVNINADEAFKGNLVDWVNSLVIAGRSKDCIDKSLVGKGHDEEITQCLKVALNCVGSRPKDRQPMYRVYESLKALAEKHGPNEQYDEFPLVFGK QEGGELKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	0	1
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	1.0	0.9322
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	2.0	0.9202
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10011065 [exp]	2.8	0.8701
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	4.0	0.8812
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	5.2	0.8817
AT4G13990			Exostosin family protein (.1)		Lus10006694 [exp]	6.0	0.8434
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	11.7	0.8736
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	12.8	0.8774
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	17.4	0.8411
AT1G24270			unknown protein		Lus10003131 [exp]	17.8	0.7919

Compare expression of checked genes

Lus10030811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.