Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69990 214 / 1e-65 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 209 / 9e-64 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 200 / 5e-60 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 134 / 7e-36 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT5G65830 118 / 1e-31 ATRLP57 receptor like protein 57 (.1) AT3G49750 113 / 7e-30 AtRLP44 receptor like protein 44 (.1) AT2G26330 94 / 1e-21 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G21090 89 / 3e-21 Leucine-rich repeat (LRR) family protein (.1) AT1G31420 92 / 9e-21 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G07180 90 / 3e-20 ERL2 ERECTA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030811 [exp] 330 / 3e-110 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008743 [exp] 147 / 3e-40 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10037226 [exp] 139 / 1e-39 AT5G48380 221 / 6e-68 BAK1-interacting receptor-like kinase 1 (.1) Lus10036697 [exp] 137 / 4e-39 AT5G48380 215 / 8e-66 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 138 / 5e-37 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10034278 [exp] 125 / 5e-34 AT5G48380 189 / 5e-55 BAK1-interacting receptor-like kinase 1 (.1) Lus10019277 [exp] 105 / 7e-27 AT3G49750 399 / 8e-142 receptor like protein 44 (.1) Lus10011561 [exp] 103 / 2e-26 AT3G49750 394 / 7e-140 receptor like protein 44 (.1) Lus10002117 [exp] 98 / 2e-24 AT3G43740 273 / 9e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081700 [exp] 256 / 1e-81 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 246 / 9e-78 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 232 / 2e-72 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G074400 [exp] 229 / 4e-71 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G178050 [exp] 153 / 2e-42 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 151 / 6e-42 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 150 / 1e-41 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003550 [exp] 139 / 4e-41 AT5G48380 180 / 5e-54 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 145 / 5e-40 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 145 / 1e-39 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10030812 pacid=23155400 polypeptide=Lus10030812 locus=Lus10030812.g ID=Lus10030812.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGCCGGAGATCTCTTCGATCCTGCTCATGATTTCTCTCTTAGTACTCTTCTACTCCGTCGTCGTCTCTGCCATCGAAGACGACATAATGT GCTTACAAGTCGTGAAGAAGACGCTCGATCCTCAGAACAAGCTCAATTGGAACCTAAACAACAACTCCGCCGGCGCAATCTGCCAGCTCAACGGCGTCAC CTGCTGGGACGAGAGGGAGAATCGGATCATCAACCTCCAGCTCCCTGACTTCCAGCTCGTCGGTCAACTCCCTGAGTCGCTCAAGTACTGCAAGAGCCTC CAGTCCTTGGATCTCTCAAAAAACGCTCTATCCGGAAGCTTACCTCCGCAAATCTGCAACTGGCTCCCTTTCGTCGTGACCTTAGATCTCTCGAGTAACT CTCTCACCGGCTCCATACCTCCAGAGATCGTCAACTGCAAGTTCCTCAACAACTTAATTCTGAATGATAACAAGCTCTCCGGGTCGATCCCTTACGGTCT AGGTCGGTTGGACCGGCTGAAGAAGTTTTCCGTCGTGAACAACGATCTCTCCGGGTCGATTCCGGCGGATCTGGCCACTTTCCCCGTGGGAGATTTCGAA GGGAACAGGAAGCTGCGCGGTCGGCCGTTGGATCGCGGTGGATTGAGTAGTAAGACTAAGAGCATAGGAATTATTATCGCTGCAGGTGTTGCCGGAGCTA CTGCCTCGATTGTTCTTGGGTTTGCGATTTGGTGGTGGCTTGGAACCAGAGAGTCCAATTTGAAAATGAGATCATCCAGTCACGGATGA
AA sequence Show only first row Show all	>Lus10030812 pacid=23155400 polypeptide=Lus10030812 locus=Lus10030812.g ID=Lus10030812.BGIv1.0 annot-version=v1.0 MEKKPEISSILLMISLLVLFYSVVVSAIEDDIMCLQVVKKTLDPQNKLNWNLNNNSAGAICQLNGVTCWDERENRIINLQLPDFQLVGQLPESLKYCKSL QSLDLSKNALSGSLPPQICNWLPFVVTLDLSSNSLTGSIPPEIVNCKFLNNLILNDNKLSGSIPYGLGRLDRLKKFSVVNNDLSGSIPADLATFPVGDFE GNRKLRGRPLDRGGLSSKTKSIGIIIAAGVAGATASIVLGFAIWWWLGTRESNLKMRSSSHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28450			Leucine-rich repeat protein ki...		Lus10030812 [exp]	0	1
AT1G79710			Major facilitator superfamily ...		Lus10024099 [exp]	12.3	0.6786
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10034457 [exp]	18.0	0.6580
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	182.3	0.5553

Compare expression of checked genes

Lus10030812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.