Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70060 128 / 1e-34 SNL4 SIN3-like 4 (.1) AT1G24190 125 / 2e-33 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT3G01320 119 / 2e-31 SNL1 SIN3-like 1 (.1.2) AT1G24200 107 / 2e-29 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 106 / 2e-29 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G59890 111 / 9e-29 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 110 / 2e-28 SNL6 SIN3-like 6 (.1) AT5G15020 109 / 5e-28 SNL2 SIN3-like 2 (.1.2) AT1G24230 92 / 3e-23 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24250 78 / 1e-17 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013293 [exp] 138 / 4e-38 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10013290 [exp] 125 / 6e-38 ND 45 / 7e-07 Lus10030817 [exp] 137 / 9e-38 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 134 / 2e-36 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10032181 [exp] 125 / 2e-33 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10014504 [exp] 124 / 3e-33 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10030816 [exp] 116 / 4e-33 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10029218 [exp] 120 / 7e-33 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10034645 [exp] 68 / 1e-14 AT1G24190 107 / 1e-27 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 137 / 1e-37 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 135 / 6e-37 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G350200 [exp] 118 / 4e-31 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat
Representative CDS sequence Show only first row Show all	>Lus10030814 pacid=23155176 polypeptide=Lus10030814 locus=Lus10030814.g ID=Lus10030814.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGAGGTGCTGCTGCTAGAGCAAGAGCAGGCACGAGTGTAAATGATGCATTGGCTTATCTCAAGGCTGTCAAGGAAACATTCAAGGAGGAAG ATCAAGGAGACAAATACGATGCATTTACCTCGCTTTTGACCGATTCCAAATCTGGAAGATTGGATCGTGCTGTTTGCATAGCAAAGATGAAGGACTTGTT GAAAGGGTATCCTCACCTGATGTTGGGGTTCTATACCTTCTTTCCAAGGGAGAAAAAGATCACTGATCTCGAACTGGAGGGTGATGAACAGCCTCCTCAA CCCAAGAAACTAGTCGACATGGGGAAAGCCAGGAAATTTGCTGACAAAATTAAGACAAGGCTTCAAGGTGATGGTGAGCATGTTTTCGAAGCCTTCTGCG ACATTTTGAAGAAGCACCACACGGAGGATAAGTCTGTAGCAGAGATTTATCTGGAGGCGGCTCCTCTGCTCAAAGGCCACCCAGATTTGCTTCGAGAGTT TGGGGAATACGTGACTTGA
AA sequence Show only first row Show all	>Lus10030814 pacid=23155176 polypeptide=Lus10030814 locus=Lus10030814.g ID=Lus10030814.BGIv1.0 annot-version=v1.0 MAEGGAAARARAGTSVNDALAYLKAVKETFKEEDQGDKYDAFTSLLTDSKSGRLDRAVCIAKMKDLLKGYPHLMLGFYTFFPREKKITDLELEGDEQPPQ PKKLVDMGKARKFADKIKTRLQGDGEHVFEAFCDILKKHHTEDKSVAEIYLEAAPLLKGHPDLLREFGEYVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030814 [exp]	0	1
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	3.0	0.8329
AT4G02100			Heat shock protein DnaJ with t...		Lus10002438 [exp]	8.1	0.7886
					Lus10029097 [exp]	8.9	0.7897
AT1G44130			Eukaryotic aspartyl protease f...		Lus10018148 [exp]	10.8	0.8095
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	12.0	0.8326
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10041810 [exp]	14.4	0.7536
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	15.2	0.7886
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	23.4	0.7561
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	27.3	0.7919
AT1G02870			unknown protein		Lus10002436 [exp]	35.3	0.7555

Compare expression of checked genes

Lus10030814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.