Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27200 565 / 0 Domain of unknown function (DUF23) (.1) AT5G40720 422 / 2e-141 Domain of unknown function (DUF23) (.1) AT3G27330 424 / 3e-138 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37420 265 / 8e-81 Domain of unknown function (DUF23) (.1) AT2G33570 43 / 0.0005 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013291 [exp] 1125 / 0 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 746 / 0 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 669 / 0 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10014568 [exp] 429 / 4e-144 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032118 [exp] 420 / 1e-140 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013221 [exp] 285 / 2e-88 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 275 / 3e-85 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 245 / 3e-73 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 135 / 7e-34 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192000 [exp] 645 / 0 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 639 / 0 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 433 / 4e-146 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G252100 [exp] 286 / 1e-88 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10030815 pacid=23155234 polypeptide=Lus10030815 locus=Lus10030815.g ID=Lus10030815.BGIv1.0 annot-version=v1.0 ATGGACTCCGACCAGCGACGGAAGCGGCCAAAGACTCGACTCAACCGAGCAACAGCCCTGAACCTAATCCTCTCATTCAGATCCCTCACTCTCTGCATAT CCACTTTCCTCTTCGTCCTCTTCTACTTCTCCAGCTCAGATCGGTCCCCTTTCCAACCCGTCCTCCGGGTCTCGGGTATAACCCGGGTCCTCCCAAACCG GCTCCTCCAGCAAGACCATTACATCGCCAGTAAGCCATCAGTCGAGAGCCGGGTTGTATTACCGGACCATTTACTGCTCATTTTATCCAACCGGGTCAGA AAGGGTGAGACTTTCGACTGCGTTTACTGCCCTTTCCCCAATGCAGACCAACTCCTCGACGAAATACTCGTGAGACCATCGATTTCCAGCGACGAGTACC AGGAGAGCAAATCAATCGTTAGATGTGAGCTACCACCTGTGAACTACTCTTCCGCAGTGGATTTGCGGCGGTCCGGTGAGGTCGTCGATGAAGTTGGGAA CTGGAAAGTAGGGAATCAGACGGCGGAGGACTTTGGGAAGTTGGTGTATGAAGCCATTCTCGATTGGAATACGGTCGTCGTATTGGTCAAGGGGCTGAAT CTGAAACCTAGAAGGGAAGTTGATCCGTCTGGATTCAAATGCCATTTTGCTCTGAGTGATTTTAATAACGGATTCCTCTTCACTACTGAAGCAACTGCAG CAGCTCAAGAAGTCGTCCGCTGCTTGCTGCCCAAATCCATTAGAAACAACAATACACATTTAGCTGAAGGAATCCGTGTCACCATATCTGAAAACTCTGC CACTGAAAGAACCATTCTTCCTTCGGTGGCGAGAGTTTACAATCCGAGATCACACCTTCTTAGAGGGGAAGAAGGATCAAATTCAAGATACGAGCTTTGT GCTTGCACAATGCTGTGGAACGAAGCAGCATTCATCAAAGAATGGGTAATGTACCATGGCTATTTGGGAGTAGAGAGATGGTTCATCTATGACAACAACA GCGACGACGGGATTGAATCTGAAATCGAAGACCTCAACACACTCAACCACAACATAACCAGACACGTCTGGCCATGGACTAAGTCCCAAGAAGCCGGATT TTCGCACTGTGCTCTACGTGCTAAGTACGAATGCAAGTGGGTAGGGTTCTTCGACGTGGACGAGTTCTTCTACCTCTATCACAACCGGGGTAGTCCAAAC TTGCTTCGATCGCTGGTATCGAACTACTCGAATAACTCGCCATTAATTGCAGAGGTGCGAACAGGGTGTCACAGCTTTGGTCCCTCCGGACTCATTGCTC CACCTCCACAAGGGGTGACGGTGGGTTACACATGTAGGCTTGCTCCTCCGGAGAGGCACAAGTCGATCGTGAGGCCAGAGCTTTTAGACGTGACGCTGAT GAATATTGTGCACCATTTCAAGCTGAGGGAAGGGTACAAGACGGCGAATTTGGGTGAGACCGTTGGGGTGATCAACCATTACAAGTACCAGGTGTGGGAT ACTTTCAAGGCCAAGTTTTTTAGGAGGGTTTCAGCATATGTGGCCAACTGGCAAGATGACCATAACAAAGGGTCTAAGGATAGAGCGCCTGGGCTGGGGA CGGAGGCTGTTGAGCCGGAGGATTGGCGGCTAAGGTTCTGCGAGGTTTGGGATACTGGGTTGAAGGATTTTGTCCTGGGGACTTTTGCTGATGTTGCTAC TGGGTTGCTTCCTTGGGAGATGAAGGGGAAGGAGAAGGAGAATTCTTATGCTGTGTGA
AA sequence Show only first row Show all	>Lus10030815 pacid=23155234 polypeptide=Lus10030815 locus=Lus10030815.g ID=Lus10030815.BGIv1.0 annot-version=v1.0 MDSDQRRKRPKTRLNRATALNLILSFRSLTLCISTFLFVLFYFSSSDRSPFQPVLRVSGITRVLPNRLLQQDHYIASKPSVESRVVLPDHLLLILSNRVR KGETFDCVYCPFPNADQLLDEILVRPSISSDEYQESKSIVRCELPPVNYSSAVDLRRSGEVVDEVGNWKVGNQTAEDFGKLVYEAILDWNTVVVLVKGLN LKPRREVDPSGFKCHFALSDFNNGFLFTTEATAAAQEVVRCLLPKSIRNNNTHLAEGIRVTISENSATERTILPSVARVYNPRSHLLRGEEGSNSRYELC ACTMLWNEAAFIKEWVMYHGYLGVERWFIYDNNSDDGIESEIEDLNTLNHNITRHVWPWTKSQEAGFSHCALRAKYECKWVGFFDVDEFFYLYHNRGSPN LLRSLVSNYSNNSPLIAEVRTGCHSFGPSGLIAPPPQGVTVGYTCRLAPPERHKSIVRPELLDVTLMNIVHHFKLREGYKTANLGETVGVINHYKYQVWD TFKAKFFRRVSAYVANWQDDHNKGSKDRAPGLGTEAVEPEDWRLRFCEVWDTGLKDFVLGTFADVATGLLPWEMKGKEKENSYAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	0	1
AT1G27200			Domain of unknown function (DU...		Lus10013291 [exp]	1.4	0.9323
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10036121 [exp]	1.7	0.9030
AT5G43150			unknown protein		Lus10004910 [exp]	2.0	0.9243
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10018598 [exp]	4.5	0.8985
AT2G43180			Phosphoenolpyruvate carboxylas...		Lus10025529 [exp]	6.2	0.8416
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	6.5	0.8863
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	7.1	0.8893
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10012796 [exp]	7.5	0.8699
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	7.9	0.8847
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10014269 [exp]	8.0	0.8656

Compare expression of checked genes

Lus10030815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.