Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70060 1313 / 0 SNL4 SIN3-like 4 (.1) AT1G24190 1253 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT3G01320 1068 / 0 SNL1 SIN3-like 1 (.1.2) AT1G59890 771 / 0 SNL5 SIN3-like 5 (.1.2.3.4) AT5G15020 729 / 0 SNL2 SIN3-like 2 (.1.2) AT1G10450 402 / 2e-118 SNL6 SIN3-like 6 (.1) AT1G65660 256 / 2e-73 SMP1 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) AT4G37120 241 / 2e-68 SMP2 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1) AT1G24200 210 / 7e-62 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 172 / 3e-49 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013293 [exp] 2404 / 0 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 1502 / 0 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10029217 [exp] 1178 / 0 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10032181 [exp] 1063 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10014504 [exp] 733 / 0 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10029218 [exp] 339 / 1e-104 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10022931 [exp] 338 / 1e-101 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10024887 [exp] 336 / 4e-101 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Lus10028956 [exp] 328 / 2e-98 AT1G65660 891 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 1826 / 0 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 1809 / 0 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G350200 [exp] 1174 / 0 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.015G048200 [exp] 279 / 1e-81 AT1G65660 830 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Potri.012G064100 [exp] 279 / 2e-81 AT1G65660 801 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1) Potri.001G316300 [exp] 74 / 1e-14 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.005G008200 [exp] 58 / 5e-10 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat PF11708 [flax] [poplar] Slu7 Pre-mRNA splicing Prp18-interacting factor PF08295 [flax] [poplar] Sin3_corepress Sin3 family co-repressor
Representative CDS sequence Show only first row Show all	>Lus10030817 pacid=23155421 polypeptide=Lus10030817 locus=Lus10030817.g ID=Lus10030817.BGIv1.0 annot-version=v1.0 ATGGTGGGAGGAGGTGCTGCCACTGGAGGGGGAGGAGGAGCTGGAGCAGGAATTAGTGCCCAAAAGCTGACTACAAATGATGCATTGGCTTATCTCAAGG CTGTCAAGGACATATTCCAGGACAAACGAGAAAAATACGATGAATTTCTCGAGGTTATGAAAGATTTCAAAGCTCAAAGAATCGACACTGCCGGTGTCAT AGGGAGGGTAAAGGACTTGTTTAAAGGGCATCGTGACCTGATTTTGGGTTTTAATACCTTCTTGCCAAAGGGCTATGAGATCACTCTACCGCTGGAGGAT GAACAGCCTCCGCAGAAGAAACCAGTTGAATTTGAAGAAGCCATTAATTTTGTGAACAAAATTAAGAAAAGGTTTCAGGGTGATGATCATGTTTACAAAG CATTTTTAGATATTTTGAACATGTACAGACAGGAGAATAAATCCATCACAGAGGTTTATCAGGAGGTGGCTGCTCTGTTCAAAGACCACCATGATTTGCT TGGAGAGTTTACCCACTTTTTACCTGATAATTCAGCTACAGCTTCTACTATGTTTGCTTCTTCAAATAGGAATTCTATTCTCCGTGATAGGAGCTCCCCG ATGCCTTCAAATCGTCAAATGCATGTTGACAAGAAAGAACGGATTCATCCAGATCGTGATTTCAGTGTTGATCGTCCTGATCCAGACCATGATAGAGCTC TGATGAGAGCTGATAAAGAGCAAAGGAGACGAGTCGAAAAAGAAAAGGAGAGAAGAGAAGATAGAGATAGGAGGGAACGTGATGATAGAGACTATGAGCA TGATGCTAGTCATGACTATCGGTTTCCACTCAAGGGGAAAGTTGGTCGTAAGTTGGAAGATTCCAGTGCTGAGTGTCAAGTTGTTGGGGGGGATGATAAC TATGGAATGCATCCTGTTTCATCCAGCTATGATGATAAAAGTGCAGTTAAAAGTGCATTAAGTCTTGAACTCGGTTACTGTGATAAAGTGAAGGAGAAGT TGGTGGAGAAGACTGGAGCTTACCAGGAATTTTTGAAGTGTCTCAATCTCTACACAAAAGACATAATCGATCGAAAAGAATTACAAAATTTGGTGGCTCA ATTACTTGCGGGATATCCTGGTCTTATAGATGGCTTCAATGACTTTTTGGCACGTTGTGAAAAGAATGAGAGCTTACTTGCTTGTCTTGTGAGTAAAAGT AATTTTCCCAGACCAGTGAAGGCGGAGGACAGGGATAGAGAGCGCGAGAGGAATGATGTCGCTAAAGAAAGGGATCATGACATGCGAGAGAGAGATAGAC TTGACAAAAATGTGGCCTTTACTAATAAAGACACTGGAAATCAAAAGATGTCCTTGTATTCTAGCAAGGACAAGCTTTTGTGGAAACCAGTCAATGAACT TGACCTTTCCAATTGTGACAGCTGCACTCCAAGTTATCGGCTTCTTCCAAAGAATTATCCCATTCCCACAGCGAGCTACAGGACAGAGATTGTTGCTGAA GTTCTGAATGACCATTGGGTATCCGTCACTTCAGGAAGTGAAGATTACTCTTTTAAGCACATGCGCAAGAACCAGTATGAAGAAAGCCTATTCCGATGCG AGGATGACAGGTTTGAGTTGGATATGCTGCTGGAATCTGTAAAGGTAACAACTAAGCGTGTAGAGGAGTTGATGGAGAATATCAACAACACTAAGAAAGG AGACAATCCCGTTCATTATGAGGACTACCTAACAGCTCTAAACCTGAGGTGCATTGAACGGTTATATGGGGATCACGGGCTTGATGTGATGGACGTGTTA AGGAGGAACACATCTCTTGCTTTGCCCGTGATATTGACTCGCTTGAAGCAGAAGCAAGAAGAGTGGGCTAGGTGCCGCTCAGATTTTAATAAAGTCTGGG CTGAAATCTATTCCAAGAACTACCACAAATCACTTGACCATCGTAGCTTCTACTTCAAGCAGCAAGATACAAAGAGCCTGAGCACCAAAGCTCTTTTGGC AGAGATTAAGGAAATTAGTGAGAAGAAGCGAAAAGAAGATGATATGCTTCTAGCATTTGCTGCTGGAAACAGGCATCCAATTATACCAAATTTGGAGTTT GAGTATCCAGATCCTGATGTCCATGAGGATTTGTATCAGCTCATCAAGTATTCTTGTGGGGAAGTTTGTACAACGGACCAGTTAGACAAGGCCATGAAAA TTTGGACAACTTTCTTAGAACCAATGCTCGGCGTTCCTTCTCGGCCTAACGGTACAGAGGACACAGAAGATGTTGTGAACGCAAAGAACTATTCTTCCAA GCATGGAGATAGCGAGGGAAGTCCAAGCAACTCGAAGCCAGGAAATCCTTCAAGAAATGGAGAAGAAAGCATCCAACCTCAGCAGTCAAGTTCAACCAGG GTATGGTTGGATAATGGGGTCAAAGAAAATGGCTCTCCGAGCACCAATCATACTGCTCGTAAACTTGATACTTGCTCCAGTGCCCTTAAAAACGATAAGC CAGACAATGAAGCCAAACAAGCTACTTCCAATGAACGGTTGGCGAATTCGAGTGCGACACAACTTGCTACAGGGGCGGAGATAAGTAATGGAAGAAACAT CCCTGAATCAGGTGCTGCGGCAGCTTCATCGATGCCTAATAGTGGCACCACTGATGGTGGGTTCGCAATAGGATCCAGTAAAGAAGTATTGCCTTCAACA GAGGCTGGTGAATTTTCAAGGCCTGTGATATCGACAAATGGGGTGGTTGCAGAGGGTATTAATAAAAGTCACAAGTACGAGGAACCGAATGCGCAGTTTA AGGTTGAAAGAGAAGAGGGTGAGTTGTCTCCGAATGGAGATTTCGAGGAGGATAATTTTGCAGTTTATGGAGAAGCTGGTTCAGAACCTGCTGCTGCAAA TAAACCGAAAGACAGTGCCCCAAGCAGACACTATCAAGGAGGAAGAAATGGGGAAGACGAAACCCGTCGAGAGGCGGCAGGAGAAAACGATGCGGACGAC GAAAACGATGCTGAGGAGAGTGCACAAAGAACGTCGGAAGACAACAGTGAGAACGTCTCTGAGAATGCTGATGTCTCCGGGAGCGAGTCCGGTGATGGTG AAGAGGAGTGCTCTAGGGAAGAGCATGAAGAAGATGGCGATCATGCTGATAATGATGATAAGGCCGAGAGCGAAGGCGAGGCTGAAGGGATGGCCGATGC TCACGACGTTGAGGGAGATGGAATGGTTTTACCGTTTTCTGAAAGATTCCTTCTTAACGTGAAACCTCTAGCGAAGCATGTCCCGCCATCGCTGCATGAA CGAGGAAAGGCTTCGCGCATTTTCTACGGAAATGATTCGTTCTATGTGCTCTTCAGGCTTCACCAAACTCTGTACGAGAGAATAAAATCTGCGAAGATCA ACTCATCGTCTGCTGACAGGAAATGGAGAACTTCAAACGATACAAGTTCTACTGATCTGTATGCTAGGTTTATGAGTGCACTGTACAACCTACTTGATGG ATCTTCGGATAACACAAAATTCGAGGATGACTGCCGAGCTATAATCGGGACACAGTCTTATGTCTTATTTACTTTGGATAAGCTTATATATAAGCTAGTC AAACAGCTCCAAACAGTGGCAACCGACGAGATGGACAGCAAGCTACTTCAGTTATACGCTTACGAAAAATCAAGAAAAGCTGGAAGATTCGTCGACATTG TGTATCATGAGAACACCCGCGTTCTCCTCCACGACGAGCATATATACAGAATCGAATGTTCCTCGAGCCCAACAAGCTTGTCGATACAGCTTATGGACTT TGTACATGACAAGCCTGAGGTGACTGCTGTTTCCATGGACCCCAACTTTGCGACGTACCTACACAACGACTTCCTCTCCATCGTTCCCAAGAAGAAAGAG AAGCCCGGTGTTTTCCTGAAGAGGAACAAACGCAGGTATGCGGTGGGCGATGAATTCCAAACCATGGAAGGATTCCATATTTTCAACGGGTTAGAATGCA AAATTGCCTGCAGTTCTTCCAAGGGTGGGAAGTCTCAGGTGCCTTCAAGTCCAGAAAGGATCATAGGAAGCAGAGGGAATTGGAGGAAGCGCGTAAAGCT GGTCTTGCTCCTGCCGAAGTTGATGAAGATTCATATGCCTCGGTATGTGTCCTCAGTGCCTTGGTATGTTAATCCTGAGCCTAGGAAGCCTAGTTTGAAA CATCAAAGGAATTGGAAGCCGGATCCGATCAATACGAACTCGGGGTACAAAAGAGTTACCAAAGTGTTTCGTGCCGAAAAATACATGAAAGGGGCTTGTC AGAATTGTGGAGCCACGACACATGATTTGAAATCTTGCATGCAGAGACCTAGGAAAATCGGGGCGAAGTGGACTAACAAGCACATTGCCCCTGACGAGAA GCAGCTTAATGTCCATGCATGGGAAGCTTTTGGTAAGGGTCAAAATATTTACGTGCAAGCTGCTCCTTCTCAAGCGGAGTTGCTGTATAAGAATTTTAAG GTGATAAAGGAGAAACTTGAGACGCAGACAAAGGATCAAATGCTTGAGAAGTATGGGAATGCTGCCAGCCTAGACCCGATTCCAGAAGAGCTTTTGCTTG GTCAGAGTGAACGTCAAGTCGAGTATGATCGTGCTGGTGGACTTATCAAGGGACAGGAAGTTGCGCTTCCGAAAAGCAAACAGAGCGTTCGAAACAGTTA CTGCACCGGTGCCGCCGGAATCAAGGCAGCCGAGGCTGCATCTGATCTGATGAAAGCAAATATCGCGCGGATGGAAGCTGACGATTATGAGGTACCGGAA CCTGTGGAGGAGAAGAGGCTTGCGACGTGGGGTTCTGAGGTGCCTGATGATCTGGTGTTGGATGAGAAGCTGCTAGCCGAATCACTGAAGAAGGAAGACC AGAGGAAGAAAGAAGAGAAGGACGAGAGGAAACGAAAGTATAATGTGAAGTGGAATGCTCAGGTTACTGTTGAGGATATGGAGGCGTATCGGATGAAGAA AGTGCATCATAATGATCCAATGAAGGATTTCCTTAACTGA
AA sequence Show only first row Show all	>Lus10030817 pacid=23155421 polypeptide=Lus10030817 locus=Lus10030817.g ID=Lus10030817.BGIv1.0 annot-version=v1.0 MVGGGAATGGGGGAGAGISAQKLTTNDALAYLKAVKDIFQDKREKYDEFLEVMKDFKAQRIDTAGVIGRVKDLFKGHRDLILGFNTFLPKGYEITLPLED EQPPQKKPVEFEEAINFVNKIKKRFQGDDHVYKAFLDILNMYRQENKSITEVYQEVAALFKDHHDLLGEFTHFLPDNSATASTMFASSNRNSILRDRSSP MPSNRQMHVDKKERIHPDRDFSVDRPDPDHDRALMRADKEQRRRVEKEKERREDRDRRERDDRDYEHDASHDYRFPLKGKVGRKLEDSSAECQVVGGDDN YGMHPVSSSYDDKSAVKSALSLELGYCDKVKEKLVEKTGAYQEFLKCLNLYTKDIIDRKELQNLVAQLLAGYPGLIDGFNDFLARCEKNESLLACLVSKS NFPRPVKAEDRDRERERNDVAKERDHDMRERDRLDKNVAFTNKDTGNQKMSLYSSKDKLLWKPVNELDLSNCDSCTPSYRLLPKNYPIPTASYRTEIVAE VLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVKVTTKRVEELMENINNTKKGDNPVHYEDYLTALNLRCIERLYGDHGLDVMDVL RRNTSLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDMLLAFAAGNRHPIIPNLEF EYPDPDVHEDLYQLIKYSCGEVCTTDQLDKAMKIWTTFLEPMLGVPSRPNGTEDTEDVVNAKNYSSKHGDSEGSPSNSKPGNPSRNGEESIQPQQSSSTR VWLDNGVKENGSPSTNHTARKLDTCSSALKNDKPDNEAKQATSNERLANSSATQLATGAEISNGRNIPESGAAAASSMPNSGTTDGGFAIGSSKEVLPST EAGEFSRPVISTNGVVAEGINKSHKYEEPNAQFKVEREEGELSPNGDFEEDNFAVYGEAGSEPAAANKPKDSAPSRHYQGGRNGEDETRREAAGENDADD ENDAEESAQRTSEDNSENVSENADVSGSESGDGEEECSREEHEEDGDHADNDDKAESEGEAEGMADAHDVEGDGMVLPFSERFLLNVKPLAKHVPPSLHE RGKASRIFYGNDSFYVLFRLHQTLYERIKSAKINSSSADRKWRTSNDTSSTDLYARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLV KQLQTVATDEMDSKLLQLYAYEKSRKAGRFVDIVYHENTRVLLHDEHIYRIECSSSPTSLSIQLMDFVHDKPEVTAVSMDPNFATYLHNDFLSIVPKKKE KPGVFLKRNKRRYAVGDEFQTMEGFHIFNGLECKIACSSSKGGKSQVPSSPERIIGSRGNWRKRVKLVLLLPKLMKIHMPRYVSSVPWYVNPEPRKPSLK HQRNWKPDPINTNSGYKRVTKVFRAEKYMKGACQNCGATTHDLKSCMQRPRKIGAKWTNKHIAPDEKQLNVHAWEAFGKGQNIYVQAAPSQAELLYKNFK VIKEKLETQTKDQMLEKYGNAASLDPIPEELLLGQSERQVEYDRAGGLIKGQEVALPKSKQSVRNSYCTGAAGIKAAEAASDLMKANIARMEADDYEVPE PVEEKRLATWGSEVPDDLVLDEKLLAESLKKEDQRKKEEKDERKRKYNVKWNAQVTVEDMEAYRMKKVHHNDPMKDFLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	1.0	0.9267
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	1.4	0.9015
AT5G23490			unknown protein		Lus10004286 [exp]	2.8	0.8471
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10035857 [exp]	3.2	0.8443
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	3.3	0.8427
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	4.0	0.8579
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	5.7	0.8608
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024136 [exp]	7.1	0.7867
AT1G03370			C2 calcium/lipid-binding and G...		Lus10003910 [exp]	7.7	0.7986
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	7.9	0.8476

Compare expression of checked genes

Lus10030817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.