Plant FIBer expression Database

Lus10030819 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G59900 124 / 8e-36 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1)
AT1G24180 119 / 1e-33 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013295
[exp]
160 / 2e-49 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1)
Lus10029216
[exp]
131 / 2e-38 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1)
Lus10010728
[exp]
130 / 6e-38 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G038400
[exp]
132 / 7e-39 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1)
Potri.008G192500
[exp]
126 / 2e-36 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1)
PFAM info
Representative CDS sequence
>Lus10030819 pacid=23155298 polypeptide=Lus10030819 locus=Lus10030819.g ID=Lus10030819.BGIv1.0 annot-version=v1.0
ATGTCCTCCTCCTTCCTCCGTCAAATCTCAACTTCAACAGAGCCCCTAACAATCGAAACATCGATCCCTTTCACCGCCCACAACTGCTCCCCTCCCTCCC
GCTCCGTCGACACCACTCCGAACGAGCTCATGTCATTCTTCCGCGACATGGCCCTCATGCGCCGGATGGAGATCGCCGCCGACTCGCTCTACAAGGCCAA
GCTCATCCGCGGATTCTGCCATCTCTACGTCGGGCTGCGGGTCGGGCCGTCTGCGTAG
AA sequence
>Lus10030819 pacid=23155298 polypeptide=Lus10030819 locus=Lus10030819.g ID=Lus10030819.BGIv1.0 annot-version=v1.0
MSSSFLRQISTSTEPLTIETSIPFTAHNCSPPSRSVDTTPNELMSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYVGLRVGPSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G59900 AT-E1 ALPHA, AT... pyruvate dehydrogenase complex... Lus10030819
[exp]
0 1
AT5G48560 bHLH bHLH078 basic helix-loop-helix (bHLH) ... Lus10002337
[exp]
2.0 0.9009
AT1G59900 AT-E1 ALPHA, AT... pyruvate dehydrogenase complex... Lus10030820
[exp]
2.8 0.9169
AT1G70330 "ENT1,AT", ENT1... equilibrative nucleotide trans... Lus10013002
[exp]
6.3 0.8694
AT5G11710 ENTH/VHS family protein (.1) Lus10005498
[exp]
6.5 0.8901
AT4G39220 ATRER1A Rer1 family protein (.1) Lus10019323
[exp]
7.2 0.8942
Lus10019700
[exp]
9.8 0.8535
AT5G10840 Endomembrane protein 70 protei... Lus10042415
[exp]
10.2 0.8964
AT1G34550 EMB2756 EMBRYO DEFECTIVE 2756, Protein... Lus10028702
[exp]
10.2 0.8895
AT1G08280 Glycosyltransferase family 29 ... Lus10043382
[exp]
13.8 0.8782
AT2G36530 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY ... Lus10002844
[exp]
14.3 0.8930

Lus10030819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.