Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70090 510 / 0 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 489 / 8e-174 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 431 / 2e-151 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT4G02130 410 / 2e-143 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G62660 404 / 2e-140 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 390 / 5e-135 GATL5 galacturonosyltransferase 5 (.1.2) AT3G06260 363 / 1e-124 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 362 / 2e-124 GATL3 galacturonosyltransferase-like 3 (.1) AT3G50760 359 / 3e-123 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 350 / 2e-119 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013296 [exp] 713 / 0 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 555 / 0 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10010727 [exp] 548 / 0 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10002440 [exp] 411 / 3e-142 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10041489 [exp] 388 / 2e-134 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 387 / 7e-134 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10016301 [exp] 370 / 1e-127 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 369 / 5e-127 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 367 / 6e-126 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038300 [exp] 522 / 0 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G192600 [exp] 514 / 0 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 409 / 2e-142 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 402 / 9e-140 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G129400 [exp] 379 / 3e-131 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 377 / 4e-130 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.014G040300 [exp] 373 / 3e-128 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 369 / 4e-127 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.002G132900 [exp] 366 / 6e-126 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G128000 [exp] 366 / 9e-126 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10030821 pacid=23155190 polypeptide=Lus10030821 locus=Lus10030821.g ID=Lus10030821.BGIv1.0 annot-version=v1.0 ATGGCTTCTTATTCTCCTTCTTCTTCCAATTTGGGTATAATCAGGTCAGATTCCTCATTTTGTTTCATCTTCATCCTCATCGCCGTTATCTCCTCTTTCT CCGTCTGCCTTGGGATCCGTTCCTTCCCCGAAACGGCCGCAGATCTAGCCGGGTCTCCATTCCGGTTCAACGAGGCCCCGGAGTACCGCAATGGCGCTGG CTGCCCGAACCTGTCCCCGGACCCGTCATTAAACGGTGTCGTGTCTCCCTGCGACCCGTCGCTAATCCACGTGGCGATGACGCTGGACTCGGAGTATCTC CGTGGATCAATCGCCGCCGTACATTCCGTACTGAAGCACGCCTCCTGCCCGGAAAACGTCTTCCTCCACTTCGTCGCGGCCGAATTCGACCCGACGACTC CGCGGGTCCTGACCCGTCTGGTGAAGTCGGTTTTCCCGTCGCTCCGGTTCCACGTCCACATATTCCGGGAAGACGCCGTCATCAACCTAATCTCGTCGTC AATCAGGCAAGCTCTCGAAAACCCGTTAAACTACGCTCGAAACTACCTCGGGGAGCTTCTCTTCCCTTGTATAAACCGGGTCATCTACCTCGATTCGGAT CTGGTTCTCGTCGACGACGTACAGAAGCTCTGGACCACCGTTCTAACCGGGTCGCGGGTCATCGGTGCTCCGGAATACTGCCACGCGAATTTCACAAAGT ACTTCACCCTGACGTTCTGGTCCGACCCGATTACGTCCCGGGTGTTCTCGACCCGGAAGCCCTGCTACTTCAACACAGGAGTGATGGTGATGGATCTGGT TAAGTGGAGGGAAGGGAATTACAGGAAGAAGATCGAGATGTGGATGGAAGTTCAGAGGCAGAGGAGGATCTACGAGCTGGGATCCTTGCCGCCGTTTTTG TTGGTGTTCGCCGGAAACGTGGAGGCGATTGATCACCGGTGGAATCAGCACGGTTTGGGAGGGGATAATGTGAGGGGAAGCTGTAGGTCTCTGCATCCCG GTCCGGTGAGCTTGCTCCATTGGAGTGGTAAAGGGAAGCCATGGGTGAGATTGGATGGGAAAGTTGCTTGTCCGCTTGATTATCTGTGGGAGCCTTACGA TCTGTATTCAGGAGGTGGGATTCAAAGGTTTTGA
AA sequence Show only first row Show all	>Lus10030821 pacid=23155190 polypeptide=Lus10030821 locus=Lus10030821.g ID=Lus10030821.BGIv1.0 annot-version=v1.0 MASYSPSSSNLGIIRSDSSFCFIFILIAVISSFSVCLGIRSFPETAADLAGSPFRFNEAPEYRNGAGCPNLSPDPSLNGVVSPCDPSLIHVAMTLDSEYL RGSIAAVHSVLKHASCPENVFLHFVAAEFDPTTPRVLTRLVKSVFPSLRFHVHIFREDAVINLISSSIRQALENPLNYARNYLGELLFPCINRVIYLDSD LVLVDDVQKLWTTVLTGSRVIGAPEYCHANFTKYFTLTFWSDPITSRVFSTRKPCYFNTGVMVMDLVKWREGNYRKKIEMWMEVQRQRRIYELGSLPPFL LVFAGNVEAIDHRWNQHGLGGDNVRGSCRSLHPGPVSLLHWSGKGKPWVRLDGKVACPLDYLWEPYDLYSGGGIQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10030821 [exp]	0	1
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	2.0	0.8927
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10042201 [exp]	3.2	0.8914
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	4.9	0.8879
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	10.8	0.8720
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	14.5	0.8634
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	16.5	0.8572
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	18.1	0.8479
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10007692 [exp]	18.2	0.8575
AT3G08670			unknown protein		Lus10025209 [exp]	21.5	0.8452
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	22.5	0.8288

Compare expression of checked genes

Lus10030821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.