Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10470 196 / 6e-62 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT1G59940 193 / 5e-61 ARR3 response regulator 3 (.1) AT3G48100 181 / 7e-57 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT5G62920 175 / 1e-54 ARR6 response regulator 6 (.1) AT1G19050 172 / 2e-53 ARR7 response regulator 7 (.1) AT3G57040 171 / 3e-52 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT2G41310 168 / 2e-51 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT3G56380 160 / 4e-49 ARR17 response regulator 17 (.1) AT1G74890 160 / 1e-48 ARR15 response regulator 15 (.1) AT2G40670 153 / 2e-46 ARR16 response regulator 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030664 [exp] 365 / 7e-128 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10029211 [exp] 272 / 8e-92 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10010723 [exp] 203 / 4e-65 AT1G10470 155 / 1e-46 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10042153 [exp] 191 / 1e-60 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10004243 [exp] 187 / 5e-59 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10016334 [exp] 167 / 7e-51 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10002750 [exp] 166 / 2e-50 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10039524 [exp] 157 / 5e-47 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10042938 [exp] 142 / 2e-41 AT1G19050 153 / 7e-47 response regulator 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037800 [exp] 200 / 1e-63 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.015G070000 [exp] 181 / 1e-56 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.003G197466 [exp] 179 / 4e-56 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.T124806 [exp] 179 / 4e-56 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.006G041100 [exp] 180 / 5e-56 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.008G193000 [exp] 174 / 3e-53 AT1G59940 198 / 1e-63 response regulator 3 (.1) Potri.016G038000 [exp] 173 / 3e-53 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.001G027000 [exp] 169 / 3e-52 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.019G058900 [exp] 167 / 4e-52 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.002G082200 [exp] 149 / 6e-44 AT3G57040 180 / 1e-56 RESPONSE REGULATOR 4, response regulator 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10030822 pacid=23155245 polypeptide=Lus10030822 locus=Lus10030822.g ID=Lus10030822.BGIv1.0 annot-version=v1.0 ATGACAAGAAACGGCGTCGTCTCTGCTCAACGGTTCGACTGCGGAGGAGGAGGAGGATTCGATGTTTCGGCCAAGCAACCGCAAACGCCGGCCGGCGGTG GTTTAGTTAGTGAGGAGGTTCATGTGTTGGCTGTGGATGATAGCCTTATTGATCGGAAAGTCATCGAGAGGTTACTCAGGAAGAAGTCTTACAAAGTTAC GGCGGTGGACAGTGGAATCAGAGCTCTGCAGTTCCTTGGATTGGATGGAGAAGAGAAGAATAGCTCCTCCGTTGGAAATTATGATAGCTTGAAAATCAAA GTGGATCTGATAATCACCGATTACTGCATGCCGGAGATGACCGGCTACGATCTACTTAAGAAAATCAAAGGATCGTCTAATTTCAGCGAGATTCCGGTGG TGATAATGTCGTCGGAGAATGTCATGACTCGAATCGACCGATGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAGCCGTCGGACGTGGA ACGCCTCGGAGGATACATGGCTACTAAAGATCCAAAAGAGAAGATCCAGGCACAGGAAGAAAGAGTCAACAAAAGAAAGCAGCGAGACGGTGGTTGCGAG AGCTGCTCCGATCTCTCCAATCTCTCCACCGCCTCTTCAATCTCATCGACTTTTTCGTTCCCCTCATCGTCGCCATCACCTTCATCGTTATCGTCTCCTA CGACATCCATGTCAACACCGTCGTCTCCTTCGCGGTCTCCCTTGCCCTCCCCGACTGTGTCAATACCGGCGATGTCTGTATCGGCGCCGCCCTCGCCGTC CGTGCTGGACTCTCCGTCGAGACGGTTGAAAATGAGCAGTCCTTCAGATTAG
AA sequence Show only first row Show all	>Lus10030822 pacid=23155245 polypeptide=Lus10030822 locus=Lus10030822.g ID=Lus10030822.BGIv1.0 annot-version=v1.0 MTRNGVVSAQRFDCGGGGGFDVSAKQPQTPAGGGLVSEEVHVLAVDDSLIDRKVIERLLRKKSYKVTAVDSGIRALQFLGLDGEEKNSSSVGNYDSLKIK VDLIITDYCMPEMTGYDLLKKIKGSSNFSEIPVVIMSSENVMTRIDRCLEEGAEDFIVKPVKPSDVERLGGYMATKDPKEKIQAQEERVNKRKQRDGGCE SCSDLSNLSTASSISSTFSFPSSSPSPSSLSSPTTSMSTPSSPSRSPLPSPTVSIPAMSVSAPPSPSVLDSPSRRLKMSSPSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59940		ARR3	response regulator 3 (.1)		Lus10030822 [exp]	0	1
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10025246 [exp]	6.3	0.8362
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10035469 [exp]	34.6	0.7611
AT1G65330	MADS	AGL37, PHE1	PHERES1, AGAMOUS-like 37, MADS...		Lus10004150 [exp]	42.4	0.8354
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10031628 [exp]	47.5	0.8311
AT5G04885			Glycosyl hydrolase family prot...		Lus10013388 [exp]	49.8	0.8307
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	56.4	0.8253
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10011582 [exp]	70.5	0.7855
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	78.6	0.7360
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10001543 [exp]	97.1	0.8070
AT1G76590			PLATZ transcription factor fam...		Lus10014396 [exp]	100.8	0.7964

Compare expression of checked genes

Lus10030822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.