Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48180 62 / 3e-14 unknown protein AT1G19020 60 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043469 [exp] 66 / 1e-15 AT3G48180 78 / 9e-21 unknown protein Lus10034115 [exp] 64 / 2e-13 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070700 [exp] 69 / 4e-17 AT1G19020 83 / 1e-22 unknown protein Potri.012G075800 [exp] 69 / 5e-17 AT1G19020 82 / 3e-22 unknown protein Potri.004G013601 [exp] 35 / 0.0008 AT1G62045 52 / 1e-10 unknown protein Potri.011G004400 [exp] 35 / 0.0008 AT1G62045 47 / 2e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030823 pacid=23155333 polypeptide=Lus10030823 locus=Lus10030823.g ID=Lus10030823.BGIv1.0 annot-version=v1.0 ATGGGGGGATCCAAGGGCTCGTACGAGAACACGTGGCCCGATCAGTGGGACGACAAGAACCAAGGCAACTACACCGCCGGCGACGGCGGCGGGGGAGGAG GAGCGGGGAAAGGGAAGTATTCGAAGAAAGTGGAGGAAGGGCTTAGCAAGACGAAGGTGGTTGCTTCGACGGGGATGAAGAAGGTTAAAGCTGGAGCTTC TATTGGGTTCTTTTGGATGAAAGATAAGTACCAGAAAACCACCAACAAGAAAACATGA
AA sequence Show only first row Show all	>Lus10030823 pacid=23155333 polypeptide=Lus10030823 locus=Lus10030823.g ID=Lus10030823.BGIv1.0 annot-version=v1.0 MGGSKGSYENTWPDQWDDKNQGNYTAGDGGGGGGAGKGKYSKKVEEGLSKTKVVASTGMKKVKAGASIGFFWMKDKYQKTTNKKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48180			unknown protein		Lus10030823 [exp]	0	1
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011557 [exp]	4.9	0.7802
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10014259 [exp]	10.2	0.7095
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	10.5	0.7507
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	19.9	0.7290
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018711 [exp]	21.9	0.7295
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034542 [exp]	22.1	0.6322
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	22.3	0.7497
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	27.4	0.7258
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	32.1	0.7469
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	33.7	0.7069

Compare expression of checked genes

Lus10030823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.