Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24840 107 / 2e-28 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 98 / 3e-25 MADS MADS-box transcription factor family protein (.1) AT5G60440 98 / 9e-25 MADS AGL62 AGAMOUS-like 62 (.1) AT1G65360 96 / 1e-24 MADS AGL23 AGAMOUS-like 23 (.1) AT1G01530 94 / 1e-23 MADS AGL28 AGAMOUS-like 28 (.1) AT2G34440 87 / 8e-22 MADS AGL29 AGAMOUS-like 29 (.1) AT1G72350 80 / 1e-18 MADS MADS-box transcription factor family protein (.1) AT3G66656 73 / 3e-16 MADS AGL91 AGAMOUS-like 91 (.1) AT2G45660 73 / 5e-16 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G51860 72 / 8e-16 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030663 [exp] 312 / 3e-110 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10012449 [exp] 119 / 2e-33 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10020511 [exp] 116 / 2e-32 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10031073 [exp] 85 / 2e-20 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10016563 [exp] 84 / 4e-20 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10040832 [exp] 81 / 3e-19 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10011787 [exp] 80 / 6e-19 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1) Lus10003481 [exp] 80 / 7e-19 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10015726 [exp] 80 / 1e-18 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084100 [exp] 119 / 5e-34 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 113 / 2e-31 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 111 / 2e-30 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 107 / 2e-29 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.008G041500 [exp] 100 / 1e-26 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 100 / 5e-26 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 97 / 2e-25 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.017G040700 [exp] 91 / 7e-23 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.001G251400 [exp] 87 / 1e-21 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.004G002400 [exp] 87 / 1e-21 AT5G60440 107 / 3e-28 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10030824 pacid=23155392 polypeptide=Lus10030824 locus=Lus10030824.g ID=Lus10030824.BGIv1.0 annot-version=v1.0 ATGGCGAGCAACAAGCCTAGCAACAATTCTCCACAGAAGTTGCCAATCAAGAAGATACTCAAAAGAAGCCACCTCCAAGTGACGTTCTCCAAGCGACGCG CGGGGCTTTTCAAGAAGGCTAGTGAGCTATGCACTCTCTGCGGAGTTGAGATCGCCGTCATTGTGTTCTCCCCCGCCGGCAAAATCTACTCATTCGGACA CTCCGACGTCGTTTCCATCGTCAGGAAATTCTTGACCTCCGCCGTGAGTCATCATCCTCCAAGTGTCGAAGCTCCCAGCCAAATCACCCCCGAGGCGCGT GAGTTGAACGCTGAGTTGACGCTGGTTCTTAGTGAGCTGGAAGTTGAGCGGAAGCAGGGGGAGGTTCTGGACCGGATGTTGAAAGCCCAAGAAGCAGAGT ATGGGCTGTCGATTGCTACTCTTGGGCTGGATGGGCTGGCCCGGTTGAGGAATGCATTGGAGGAGCTACAACTCAATGTAGAGAATCAGAAGATTTCAGA GGGTTACGAATATGGCAATTTCTCTGAGAACTGGAGCTTCTAA
AA sequence Show only first row Show all	>Lus10030824 pacid=23155392 polypeptide=Lus10030824 locus=Lus10030824.g ID=Lus10030824.BGIv1.0 annot-version=v1.0 MASNKPSNNSPQKLPIKKILKRSHLQVTFSKRRAGLFKKASELCTLCGVEIAVIVFSPAGKIYSFGHSDVVSIVRKFLTSAVSHHPPSVEAPSQITPEAR ELNAELTLVLSELEVERKQGEVLDRMLKAQEAEYGLSIATLGLDGLARLRNALEELQLNVENQKISEGYEYGNFSENWSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030824 [exp]	0	1
AT4G17565			F-box family protein with a do...		Lus10035492 [exp]	13.6	0.7327
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007210 [exp]	41.2	0.7134
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10037240 [exp]	48.4	0.6969
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10023245 [exp]	60.6	0.6719
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	71.8	0.6889
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	76.1	0.6892
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10028047 [exp]	84.6	0.6899
AT1G03260			SNARE associated Golgi protein...		Lus10012371 [exp]	119.0	0.6721
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	124.0	0.6562
					Lus10020933 [exp]	239.5	0.6062

Compare expression of checked genes

Lus10030824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.