Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70180 98 / 1e-22 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT5G48680 50 / 4e-07 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G07170 48 / 2e-06 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030661 [exp] 560 / 0 AT1G70180 102 / 6e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10014516 [exp] 79 / 2e-16 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10038185 [exp] 66 / 3e-12 AT3G07170 234 / 9e-79 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10011841 [exp] 62 / 2e-10 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10022780 [exp] 60 / 2e-10 AT3G07170 219 / 5e-73 Sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036500 [exp] 300 / 8e-101 AT1G70180 134 / 1e-35 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.008G193300 [exp] 293 / 4e-98 AT1G70180 122 / 3e-31 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.002G244700 [exp] 66 / 1e-12 AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G190800 [exp] 59 / 3e-10 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF00536 [flax] [poplar] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10030825 pacid=23155363 polypeptide=Lus10030825 locus=Lus10030825.g ID=Lus10030825.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCTTCCAACGGTCGCGTTACCATTACCCTTGGCGGTGGTGGTCAGGTTGTGAGACGAGCAGTATCAGACGTTGGATACTCAGATTCTCTGT TAGGTTCTGGCGGGAAGCGCTCCGTGAGAGATAGGCTGGGTGGTGACGCAGAGAGTTCAGTGTCTCGCGGCAAACGGCAAAGAGGTGATAGTTACTTGTC TGCTTCGAATGCTGCTGGCATTAGGGATGCTCGTATCGGTAAGGATGATCTTCGATTGAAACTCCTGCAAAAGAACGTGGGTAGAAGAAGTCATAGCGAT GATGACCCGAGGGATCTACGTGATAAGATCTCAAGGAAGACACAACCCCCCAGCCATCCTCCTAGTGCTCTTGGTATGCGTGGGAGCGTGGTAGATCCCA GAGAGACTAGTCTTTTGGGCCGAATCCCACCTGTAAGAAGCTCAAGTGAAGTATCTCAGATGGAATCATCGAGAAGTTCGTATTCCCCTTGGACTTTGGA CCATATAAGACGGAGATCTCCTGGTAGAATTATAACTTCTTCGATGGCCCCAGAGAGAGGCATGAGTAGCTCTAGGGGATATTCTCCGCCAAGGCGTATG GATGAAGTACAGCCAAGGTCACTAAACAGACCCTATGATGATCTTAGATCAGTTCCATACATACCAAGAGATGTCCGTGATGCTCCAAGGCCTGGGAGTA GTTCTGCACAGTTCATGACAAAACCAGGCTTGGCTACTGTTTCTGCAAATAGTGCAGCCCCGATACCAGGCCCAGTTCCTCCACCTAGTAGTGGTTTGCA GAAACAGGCATATGCGGAGGAAGAACATCAGACTATTGAAGGCTTATTGCATTCTCTGGGATTGGGCAAATATATCATTCTTTTCAAAGCCGAGGAAGTG GATATGACCGTACTGAAGCAGATGGGTGAAAGTGACCTGAAAGAACTCGGTATACCCATGGTGTATGTTGATTGTCCGGGAGTTCTTCCACAACACAGTT GA
AA sequence Show only first row Show all	>Lus10030825 pacid=23155363 polypeptide=Lus10030825 locus=Lus10030825.g ID=Lus10030825.BGIv1.0 annot-version=v1.0 MAEASNGRVTITLGGGGQVVRRAVSDVGYSDSLLGSGGKRSVRDRLGGDAESSVSRGKRQRGDSYLSASNAAGIRDARIGKDDLRLKLLQKNVGRRSHSD DDPRDLRDKISRKTQPPSHPPSALGMRGSVVDPRETSLLGRIPPVRSSSEVSQMESSRSSYSPWTLDHIRRRSPGRIITSSMAPERGMSSSRGYSPPRRM DEVQPRSLNRPYDDLRSVPYIPRDVRDAPRPGSSSAQFMTKPGLATVSANSAAPIPGPVPPPSSGLQKQAYAEEEHQTIEGLLHSLGLGKYIILFKAEEV DMTVLKQMGESDLKELGIPMVYVDCPGVLPQHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10030825 [exp]	0	1
AT3G08020			PHD finger family protein (.1)		Lus10019715 [exp]	25.9	0.7622
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	124.3	0.7142
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	196.8	0.6876
AT3G14750			unknown protein		Lus10013698 [exp]	230.7	0.6868

Compare expression of checked genes

Lus10030825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.