Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24120 516 / 0 ARL1 ARG1-like 1 (.1) AT1G68370 438 / 4e-153 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 429 / 3e-149 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT3G17830 77 / 4e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 76 / 7e-15 GFA2 gametophytic factor 2 (.1) AT3G62600 73 / 3e-14 ATERDJ3B DNAJ heat shock family protein (.1) AT5G06910 72 / 4e-14 ATJ6, EMB1393 J-domain protein 6 (.1) AT4G39960 74 / 5e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 73 / 7e-14 DNAJ heat shock family protein (.1) AT2G20560 72 / 7e-14 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030660 [exp] 702 / 0 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10029202 [exp] 589 / 0 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10010717 [exp] 563 / 0 AT1G24120 590 / 0.0 ARG1-like 1 (.1) Lus10005113 [exp] 429 / 2e-149 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10034344 [exp] 378 / 4e-129 AT1G68370 624 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10011934 [exp] 79 / 6e-16 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10035855 [exp] 78 / 2e-15 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10027634 [exp] 77 / 3e-15 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10036638 [exp] 77 / 7e-15 AT5G48030 516 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036200 [exp] 560 / 0 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G193500 [exp] 541 / 0 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.008G123200 [exp] 431 / 2e-150 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 423 / 5e-147 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.009G065500 [exp] 84 / 2e-17 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 81 / 3e-16 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G073900 [exp] 77 / 2e-15 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 75 / 2e-14 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 74 / 2e-14 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 73 / 4e-14 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10030827 pacid=23155206 polypeptide=Lus10030827 locus=Lus10030827.g ID=Lus10030827.BGIv1.0 annot-version=v1.0 ATGCCCGGCCACCGATCGAAGTCGGAGAAGGAGGTTTCCGGGGTCAGCCGGGACCCTTACGATGTCCTCGGCGTGTCGAGGAACTCCTCCGACCAGGAAA TCAAGAGCGCGTACCGTAAATTGGCACTCAAGTACCATCCTGACAAAAATGCAAATGATCCGGAAGCTGCTGATATGTTCAAAGAAGCTACATTCTCCTA TAGCATATTGTCTGATCCGGAGAAAAGACACCAGTTTGACCATGCAGGCTTTGATGCTGTTGAGGCAGACAATCGGGATCTGGAGCTGGATCTCTCAAGT TTAGGAACCGTGAACACTATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCCATTAAGACTACTGTATCAGTCAGTATTTTGGAAGAAGCACTTAATG GTGCAGTTTCCATTTGCCCACTTGAACTAGGGGATCCAATATCCCGGAAGGTTGAGAAGCAATGTGCTCACTTCTATTCTGTCACAATCTCAGAGCAAGA AGCAAAAGCCGGTCTTGTTTGCCGAGTGCAATCAACTGACAAAAGCAAGTTCAAGTTATTGTACTTTGATCAGGAAGAAAGCTGTGGATTGAACCTTGCT CTTCAGGAGGAAAGCACCAGAACTGGGAAAGTTACATCTGCCGGAATGTATTTCCTTGGCTTTCCTACTTATCGGTTGGATAAAAAAGTGAACTCGCTTG CGGCTGCCAAGGATGATGATGCTGCCTTCTTTAAAAGGCTGGATGGCTTTCAACCATGCGAAATAAATGAATTGAAGGCCGGAACACACGTGTTTGCTGT CTATGGCGACAATTTTTTCAAAAGTGTAAGCTATACAATAGAAGCCGTTTGTGCCAAACCTTTTGCAAAAGAGAAGGATAATCTAAGAGCTGTCGAAGCT GAAATCCTCGAGAAAAGAGTAGAAATACGGAAATTCGAGAGCGAATACAAAGAGATCGACGTGCTCTTAGAGCAAAGGAACGACATCCACGCAGCCTACA CAGTTGCACCACCGATGAAGTGTAGTGCGAGCAGAAGTCGGAAGAGGGGCTCCTTCAAGGAGACCCATCGTGAAGATGGAGGAGAAGCGAAAGATAAGAA ATCTTCAACGAAAGATCGGTCGAAAAGGAATTGGTTCAGCATCCAGTTGAAAGTAAACAAGGGAAAGGCCTGCTAA
AA sequence Show only first row Show all	>Lus10030827 pacid=23155206 polypeptide=Lus10030827 locus=Lus10030827.g ID=Lus10030827.BGIv1.0 annot-version=v1.0 MPGHRSKSEKEVSGVSRDPYDVLGVSRNSSDQEIKSAYRKLALKYHPDKNANDPEAADMFKEATFSYSILSDPEKRHQFDHAGFDAVEADNRDLELDLSS LGTVNTMFAALFSKLGVPIKTTVSVSILEEALNGAVSICPLELGDPISRKVEKQCAHFYSVTISEQEAKAGLVCRVQSTDKSKFKLLYFDQEESCGLNLA LQEESTRTGKVTSAGMYFLGFPTYRLDKKVNSLAAAKDDDAAFFKRLDGFQPCEINELKAGTHVFAVYGDNFFKSVSYTIEAVCAKPFAKEKDNLRAVEA EILEKRVEIRKFESEYKEIDVLLEQRNDIHAAYTVAPPMKCSASRSRKRGSFKETHREDGGEAKDKKSSTKDRSKRNWFSIQLKVNKGKAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	0	1
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	1.0	0.9340
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	2.8	0.9225
AT2G38450			unknown protein		Lus10001262 [exp]	2.8	0.9243
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	2.8	0.9140
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	3.9	0.9223
					Lus10001241 [exp]	5.3	0.9150
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	6.5	0.9235
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	6.7	0.9096
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Lus10003725 [exp]	7.2	0.9063
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	9.1	0.8714

Compare expression of checked genes

Lus10030827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.