Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51760 487 / 4e-171 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G56660 471 / 4e-165 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51780 465 / 1e-162 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 460 / 1e-160 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G44350 448 / 1e-155 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT3G02875 428 / 6e-148 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G54140 405 / 6e-139 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT4G17830 42 / 0.0006 Peptidase M20/M25/M40 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030659 [exp] 835 / 0 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 695 / 0 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 694 / 0 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10037601 [exp] 509 / 9e-180 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 462 / 1e-161 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10025668 [exp] 454 / 1e-157 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10006864 [exp] 449 / 2e-156 AT1G51760 586 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 439 / 5e-152 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 435 / 2e-150 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035900 [exp] 642 / 0 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.003G045200 [exp] 509 / 6e-180 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 504 / 2e-177 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 501 / 7e-176 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.006G207400 [exp] 461 / 8e-161 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 459 / 1e-159 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 457 / 2e-159 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 452 / 2e-157 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.012G007400 [exp] 444 / 3e-154 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.003G091100 [exp] 49 / 3e-06 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10030828 pacid=23155404 polypeptide=Lus10030828 locus=Lus10030828.g ID=Lus10030828.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGCAAATCATACTCCTCCTCATCGCTTCCTTTCTCTGCCGTTGTGATAAGTCCCTGAGCTTCCAATTGGCCCCCAATTCGAAAAACTGTT CGATCAAGGACCGGATCGTGGGACTGGGTAAGGAGCAGGCGACGGTGGATTGGATGAAGGGGATACGGCGGAGGATTCACGAGAATCCGGAGCTGGCCTA TGAGGAATACCAAACGAGTGAGCTGATTAGGGAGGAGCTCGATCGGCTCGGGATTCCGTACCGGTGGCCGGTCGCGAAAACCGGGATTGTCGCCACGGTT GGGAGCGGTTCGCCGCCGTTCGTCGCTCTGAGAGCCGATATGGACGCTCTGCCTATTCAGGAAATGGTGGAGTGGGAGCATAAGAGCAAAGTAGACGGCA AAATGCATGCTTGCGGCCATGATGCTCACGTTGCAATGCTGCTCGGTGCAGCAAAGATCCTGCAACAGATTCGAGACACATTGCAAGGGACAGTGGTCTT GATCTTCCAACCGGCAGAGGAGAGAGGCCGTGGAGCCAAAGACATGATCGAAGAAGGCGCATTGGACAATGTGAAAGCAATCTTCGGCCTCCACATAGCT CATGTGTTCCCAACCGGTTCGGTTGCTTCCAGGCCAGGACAGTTCCTGGCCGGATGCGGAAGCTTCAAGGCGAAGATCACCGGGAAAGGCGGCCACGCTG CGATCCCTCAAAACTCGATCGATCCGATCATCGCCGCTTCTTCCTCAGTCATCAGTCTCCAAAACATTGTGTCGAGAGAGGCCGACCCTTTCGATTCGCA GGTGGTTTCTGTGGCGATGATCAACGGTGGGAACGCGTTCAATGTGATTCCGGACTCGACCACCATAGCTGGAACATTCAGGGCATTCAGCAGGGAGACA TTCAAGTCGTTAAGGGAGAGGATCAAGGAAGTTATCGGAGCACAGGCAGCGGTCCATAGGTGCACTTCGGATGTGGATTTCGACGGGAGCGAACATCCGA CGATTCCTCCCACGATAAACGACGAGGGTGTGTACGAGCTCGCAAGACTCGTCTCACAGGATGTGGTTGGGGAGTCCAACACTAAGGTGTCCCCTAGCTT CATGGGGAGTGAGGATTTTGCGTTTTACCTGGATAGAGTTCCTGGCTCTTTCATGTTTTTAGGGATTAGGAATGAGAAATTGGGGGCAATTTACCCTCCT CATAACCCTTATTTTTTCCTAGATGAAGATGCTTTGCCTGTAGGGGCAGCTGTACATGCTTCCTTTGCACATTCTTTTCTCTCTAATTCTACCACGAGTT CTAGTTCTTACTGCTAA
AA sequence Show only first row Show all	>Lus10030828 pacid=23155404 polypeptide=Lus10030828 locus=Lus10030828.g ID=Lus10030828.BGIv1.0 annot-version=v1.0 MAAAQIILLLIASFLCRCDKSLSFQLAPNSKNCSIKDRIVGLGKEQATVDWMKGIRRRIHENPELAYEEYQTSELIREELDRLGIPYRWPVAKTGIVATV GSGSPPFVALRADMDALPIQEMVEWEHKSKVDGKMHACGHDAHVAMLLGAAKILQQIRDTLQGTVVLIFQPAEERGRGAKDMIEEGALDNVKAIFGLHIA HVFPTGSVASRPGQFLAGCGSFKAKITGKGGHAAIPQNSIDPIIAASSSVISLQNIVSREADPFDSQVVSVAMINGGNAFNVIPDSTTIAGTFRAFSRET FKSLRERIKEVIGAQAAVHRCTSDVDFDGSEHPTIPPTINDEGVYELARLVSQDVVGESNTKVSPSFMGSEDFAFYLDRVPGSFMFLGIRNEKLGAIYPP HNPYFFLDEDALPVGAAVHASFAHSFLSNSTTSSSSYC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030828 [exp]	0	1
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023282 [exp]	3.0	0.9584
					Lus10020461 [exp]	3.9	0.9310
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	5.6	0.9612
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028378 [exp]	10.2	0.9593
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10039911 [exp]	13.4	0.9270
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	20.7	0.9310
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038524 [exp]	27.5	0.9253
					Lus10006567 [exp]	27.9	0.9459
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030659 [exp]	28.2	0.8860
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10018382 [exp]	28.4	0.8858

Compare expression of checked genes

Lus10030828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.