Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10510 695 / 0 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT3G63130 96 / 2e-20 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT5G19320 89 / 2e-18 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G06000 42 / 0.0006 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030658 [exp] 1068 / 0 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10006930 [exp] 91 / 7e-19 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10014670 [exp] 85 / 7e-17 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10010523 [exp] 84 / 2e-16 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10034066 [exp] 83 / 2e-16 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10016591 [exp] 60 / 7e-09 AT5G55540 1027 / 0.0 LOPPED 1, tornado 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193700 [exp] 790 / 0 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.002G052900 [exp] 99 / 1e-21 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.005G209600 [exp] 92 / 2e-19 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.010G091100 [exp] 90 / 1e-18 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.001G361200 [exp] 56 / 8e-08 AT5G55540 1900 / 0.0 LOPPED 1, tornado 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030829 pacid=23155310 polypeptide=Lus10030829 locus=Lus10030829.g ID=Lus10030829.BGIv1.0 annot-version=v1.0 ATGAGTTCTTCTTCCACTCTCTCCCTCTGCTCCCATCCTCAGACATCAGTGCTCCTGCAGATTGCTCGCCCTCCGTCGCCGCTGCGCTACCGAGCTCAAG GCGCGCTGCTTTTGTCGTTTTCTTCGGATTCTACTTCGAGAAGAAGATGTTTCAGGTTCAAGAGCTTAGTCGTTAACGCTGCAGCTTCGACGTCCGGTCG TGGCCGGAGAGTCTATAAGCAGTCCCAAAGAGAGAGTGCTTTCGGCGGCGGTCCTCCAGTGCAGCAGATTGCTTCATTTGCGCTTCCCGCCGGCGTGGCC CTTGTGGCTAGCATCGGTACTGGAATTAATTTCTTCCAGCTGCTTGTGAATTTTGCGATTGATTGCCTTTGGCATTTACTATGGAAATTGGCGGAGAAAG TCTTAAAGCCGAAGCCAGGTAGCCCTTCAGTGGAGGAAAGGGTTGCAGTGGAGGGAAAGGAAGTTCCTGCCAAGGGAATGAGTTGGCCTTTTGGTGCTGG ATCGAATTTGCTGTCGAGTTTCTCTTCCAACGAGGCCAAGGCGACGCTCAATGCATTTGCCAACGAGTTATTAAGATATGGAAGCGTTGACATGTCAGGG TGTAATTTTGGAGATGAAGGCATGTTCTACCTTGCTACGAACCTGGCTTATAACAAGACTCTAGAGGAAGTTAGCTTTGCTTCTAATGGAATAACGGCAC AAGGGATAAATGCTTTTAAAGGGGTTCTTGAAACGAACATTCATCTGAAAACTCTGAACCTTTCTGGGAATGCCATTGGAGATGAAGGAACCAAGATCCT ATGTGCAATATTGGCGAATAATACTGGTATTGAAAAGCTCCAGCTGAATAGTGCTGACGTGGGTGATGAGGGAGGACAAGCTATCGCAGACCTGCTGAAG AAAAACTCAATCTTACGTGTGATTGAACTTAACAACAACATGATTGATTATTCTGGATTTACAAGTCTTGCTGGAGCATTAGCCGAGAACAACACAGTAC GAAGTTTGTATCTCAATGGCAATTATGGGGGAACACTTGGTGTTAATGCTTTGGCGAAAGGGCTAGAGGGGAACAAGGCGTTGCAGGAACTTCACTTGCA AGGAAATTCAATCGGTGACGAGGGAGCTCGTGCTCTGATATCAGGGTTGTCGTCCAGTAAAGGAAAGCTCACTCATCTAGACCTCGGCAACAACTCAATA AGCGGAACCGGTGCTTTTCATGTTGCTGAATACATAAAGAAGAGCAAAAGCTTGTTTTGGCTGAACTTATACATGAATGACTTGGGAGACGAGGGTGCGG AGAAGATTGCTGCTGGTTTAAAGGAGAACCGGAGTATATCAATCATAGATCTGGGAGGAAATAACATACGAACCAACGGGATCACTGCAATAGCTCGAGT CTTCAAAGATAACTCTGTTATCACGACATTGGAAATGGGTTATAATCCTATCTTACCGGATGGAGCAAAGGCATTATCCGACATTCTCAAGTTTCATGGC AGCATAAAAGTCTTAAAGCTTGGTTGGTGTCAGATAGGTCCCAAAGGAGCAGAACACATTGCAGAAACTCTTAAATATAACAACACCATCTCGTTGTTGG ACTTGAGAGGAAATGGACTCAAAGACGAAGGTGCAGTCTGCATTGCTCGCAGCTTGAAGGTGGTAAATGAAGTCCTTACAGAACTCGACCTTGGATTCAA TGAAATACGAGATGATGGAGCTTTTGCCATAGCTCAAGCACTGAAAGCCAACGAAGACGTGAAGATAGCTTCTATAAACCTTGCAAACAACTTCCTCACC AAATTCGGCCAGGGCGCGCTGAGTGATGCAAGAGACCATGTGCTTGAGATGAACGAGAAGGAAGTGAACATTGTGTACTAG
AA sequence Show only first row Show all	>Lus10030829 pacid=23155310 polypeptide=Lus10030829 locus=Lus10030829.g ID=Lus10030829.BGIv1.0 annot-version=v1.0 MSSSSTLSLCSHPQTSVLLQIARPPSPLRYRAQGALLLSFSSDSTSRRRCFRFKSLVVNAAASTSGRGRRVYKQSQRESAFGGGPPVQQIASFALPAGVA LVASIGTGINFFQLLVNFAIDCLWHLLWKLAEKVLKPKPGSPSVEERVAVEGKEVPAKGMSWPFGAGSNLLSSFSSNEAKATLNAFANELLRYGSVDMSG CNFGDEGMFYLATNLAYNKTLEEVSFASNGITAQGINAFKGVLETNIHLKTLNLSGNAIGDEGTKILCAILANNTGIEKLQLNSADVGDEGGQAIADLLK KNSILRVIELNNNMIDYSGFTSLAGALAENNTVRSLYLNGNYGGTLGVNALAKGLEGNKALQELHLQGNSIGDEGARALISGLSSSKGKLTHLDLGNNSI SGTGAFHVAEYIKKSKSLFWLNLYMNDLGDEGAEKIAAGLKENRSISIIDLGGNNIRTNGITAIARVFKDNSVITTLEMGYNPILPDGAKALSDILKFHG SIKVLKLGWCQIGPKGAEHIAETLKYNNTISLLDLRGNGLKDEGAVCIARSLKVVNEVLTELDLGFNEIRDDGAFAIAQALKANEDVKIASINLANNFLT KFGQGALSDARDHVLEMNEKEVNIVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	0	1
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10022022 [exp]	2.0	0.8531
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	3.5	0.8344
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	6.0	0.8329
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	9.3	0.8410
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	9.4	0.7936
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	10.0	0.8131
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	11.5	0.8215
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	12.0	0.8112
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	13.4	0.7944
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	13.9	0.7933

Compare expression of checked genes

Lus10030829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.