Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28230 305 / 4e-103 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) AT4G09070 281 / 1e-93 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) AT1G10522 165 / 4e-49 unknown protein AT2G28020 67 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030654 [exp] 338 / 8e-117 AT2G28230 234 / 2e-79 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) Lus10030655 [exp] 318 / 1e-108 AT1G10522 170 / 3e-54 unknown protein Lus10030834 [exp] 124 / 1e-33 AT1G10522 125 / 7e-37 unknown protein Lus10030652 [exp] 61 / 4e-11 AT1G10522 62 / 6e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143400 [exp] 339 / 2e-116 AT2G28230 356 / 3e-126 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) Potri.010G094900 [exp] 163 / 4e-48 AT1G10522 196 / 1e-64 unknown protein Potri.005G126902 [exp] 85 / 2e-20 AT2G28230 87 / 9e-23 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF08612 [flax] [poplar] Med20 TATA-binding related factor (TRF) of subunit 20 of Mediator complex
Representative CDS sequence Show only first row Show all	>Lus10030830 pacid=23155208 polypeptide=Lus10030830 locus=Lus10030830.g ID=Lus10030830.BGIv1.0 annot-version=v1.0 ATGGCTGCGACATGGAGCAGTAAAGCTCTCGTCTCTTCTCCACTTGTCCAAGTTCCTCGCGCTCTTCTTGCTGCATCTTCTCCTCCAGTGGTGGTGCGTT CCTGTTCCTCGAGGCCAAGCCAATTAGCTGGTGGCTTCAGAGCTGCACATCCTTATTTCCACCACCCACCAATCCACAGAAGGCCCCCAACAAAGCTTTT CTGCGAAGAAGTAGAGGAGGGGGAGGAGGAGGATTTCGATTACAACTATAAATTTCCCGATCCAATTCCCGAATTCGCCGATGCCGAGACTGAGGAATTC AGAAACTTTCTAATTGAGAAGCTTTCCAAGAAAGAGGCGTTCAAAGATTCACTTGATGAAGTAGTAGAAATCTGCACTGAGATCATGGGCACCTTCTTCC ACACGGAATACGGTGGTCCTGGCACACTGCTGGTCGATCCTTTCGGGGATATGGCTGACGAAATCGAGGAGCGTGGATTGCCAGGAGCGCCTCAGGTGTC ACGCGTGGCTCTGAAATGGGGCCAAAAACATGTGGACAAGGATTGGAAGGAGTGGACCAATTACAAACTAACCGTTAAAGCTCAGGCTGTACAGCGCAAC GCTACCCAACCAGTATCGCATTGTGCGGAGCTTGGTAATGGCCATACAACATTAGTTGGGGTTTTGCACTGGCAACCAAATCCGGGAAGCACGATCAACA CACAGATCGTGAACGAAGTAGCTCAGTGTGCGGAATCAATCAACGGCGTGAAAGATGGGAGGTGGAAAGCTACTCTCACACTGTTCAAGCCAATGCTACG AGACCAGAGCCTAGCCGGCGAATACCCTCGTGAACTATTGGGGGTTTCGCTGCAGGAGCAGCCCAACAAGTACTACTTCATAATCAGAGGTCAGAGGTTG GTAACCGAGGCTGATTCCTCCATCCAGACTATCATGGAGAAGCTTCAGTCCTACAAATCCAGAATTGCGCTTTATTTCGAGGGGTTGCAGTACCAACTTG GTGATTTTCAGTTGAGAGTCGGGAAGGTTGTCCCCAGTAACTCTGAGAGCTTGAGGGGAATAGTACTCGAGGTGGAGTATCTTCCGGTATCTTCGATGGA GAAGGCCAGTCAAGTACTAGCTGATTTCGTTGATATATTGCACGAAGCTATCGTGAAACGATCTCTGCACGGAAGCTTTATGCACAATGAACCCAATTTG TTGGAGTACGGTCTAGGAGATGAGTATACGTCACAACACACAGCTGTGCTGTACGCCAGTGTGATGGCTCAATTGATTGCGTCGCAGCCGATGAGGAACT AG
AA sequence Show only first row Show all	>Lus10030830 pacid=23155208 polypeptide=Lus10030830 locus=Lus10030830.g ID=Lus10030830.BGIv1.0 annot-version=v1.0 MAATWSSKALVSSPLVQVPRALLAASSPPVVVRSCSSRPSQLAGGFRAAHPYFHHPPIHRRPPTKLFCEEVEEGEEEDFDYNYKFPDPIPEFADAETEEF RNFLIEKLSKKEAFKDSLDEVVEICTEIMGTFFHTEYGGPGTLLVDPFGDMADEIEERGLPGAPQVSRVALKWGQKHVDKDWKEWTNYKLTVKAQAVQRN ATQPVSHCAELGNGHTTLVGVLHWQPNPGSTINTQIVNEVAQCAESINGVKDGRWKATLTLFKPMLRDQSLAGEYPRELLGVSLQEQPNKYYFIIRGQRL VTEADSSIQTIMEKLQSYKSRIALYFEGLQYQLGDFQLRVGKVVPSNSESLRGIVLEVEYLPVSSMEKASQVLADFVDILHEAIVKRSLHGSFMHNEPNL LEYGLGDEYTSQHTAVLYASVMAQLIASQPMRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28230			TATA-binding related factor (T...		Lus10030830 [exp]	0	1
AT1G76405			unknown protein		Lus10025161 [exp]	1.7	0.8811
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	2.2	0.9000
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	3.2	0.8671
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10025637 [exp]	3.7	0.8613
AT3G09860			unknown protein		Lus10023014 [exp]	4.5	0.8918
AT3G09860			unknown protein		Lus10001400 [exp]	4.9	0.8789
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035122 [exp]	5.8	0.8368
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	6.7	0.8477
AT4G13590			Uncharacterized protein family...		Lus10011763 [exp]	8.7	0.8355
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	8.9	0.8499

Compare expression of checked genes

Lus10030830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.