Plant FIBer expression Database

Lus10030831 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10520 646 / 0 AtPol{lambda} DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030656
[exp]
841 / 0 AT1G10520 744 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Lus10007325
[exp]
216 / 3e-68 AT1G10520 234 / 2e-75 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G094800
[exp]
656 / 0 AT1G10520 724 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0198 HHH PF10391 DNA_pol_lambd_f Fingers domain of DNA polymerase lambda
Representative CDS sequence
>Lus10030831 pacid=23155315 polypeptide=Lus10030831 locus=Lus10030831.g ID=Lus10030831.BGIv1.0 annot-version=v1.0
ATGGCGCCAAGGGCAACCAAAAGCAAAGCCCTTTCGATCGACCCAGATGCAATGTTCGCCGGAATGATTGTGTTCTTGATCGACAATGAAGTACAGCCCC
GCCGGCTAGAGATTTGGAAGCAGAAGCTGATGCAAATGGGAGCAACAATCGAGGACCGCTTCTCCAAGAAGAATAGACATCGCCTTGAACGCTTCAAAGG
AAGAGCTCTCCTCTACCAGTGGATTGAAGAGAGTCTGAGATTAGGGGAAAAGGTTTCGGAGGATTCATACTGCATAGATGTTAACTCACAAAGAAGCAAG
AGTAGTAGAAATGGCAATGATGAGTCTTCTCCTTTGAAGAAGGTGAGATCATGTGATCCTCCTGATACTGTGAAGAGTTTCAAAGTAGATAGTAGCAAGT
CAGATTCCAATAGCTTGAATGAATCTCTTAGTCCAGGAAGGACTAGCCCGAAGAGTGTCTGTAGCTCGAATACCGATTTGTCGTTGGAGTATAATCCACC
TGATTTGAATAGGAACATCACTGAGATTTTCGGGAAGCTTATCAATATCTATCGGGCACTGGGTAAGGATCGAAGGTCGTTTAGCTATTACAAGGCGATC
CCGGTTATTGAGAAGTTACCATTCAAAATCGAGAGTGCAGAACAGGTGAAAGGTCTGCCTGGGCTTGGGAAGTCGTTGCAGGACCATATCCAAGAGATAG
TAACTACAGGCAAATTGTCCAAGTTGGAGCACTTTGAAACGGATGAAAAGGTGCGTGCCATTACTTTGTTTGGAGAAGTGTGGGGTGTCGGTCCAGCTAC
TGCCCTGAAGTTGTACGAGAAAGGACATCCCACGTTAGATGATCTGAAGAACGATGATTCCTTGAATAATTCACAGAAGATAGGGCTGAAATACTTCGAC
GACATTAGGACAAGGATTCCACGCAGCGAGGTTCAAGAAATGGAACAACTACTGCAGAAAACTGGTGGAGAAATTTTGCCAGGGGTACTTATTGTATGCG
GAGGATCATATAGACGCGGGAAATCATCGTGTGGGGACATGGACATTGTAGTTACTCACCCGGACGGGACAAGCCATAAAGGGTTTCTGTCAAAATTCGT
GAAACGACTCAAGGGCATGGAGTTCTTAAGAGAAGATTTAGTTTTCAGCACCCATAGCGAGCAGGGTACTGATTCCGGTGTTGACACATATTTCGGTCTT
TGTACATGTCCTGGACAAGAACTGCGACGCTGGATAGATTTCAAGGTATATCCGAGGGACATATATGCTTTCGGTCTCATAGCATGGACTAGGAATGATA
CACTCAACAGAAGGTTGAGGCTGCTAGCTGAATCGAGAGGCTTCCGGCTAGATGACACCGGTCTATTCCCAGCTACTCATTCTTCAGGTGGCAAACGGGG
TTCGAGGGCGACCGCGAGCTTAAAACTGCAGACGGAGAAGGAAGTTTTTGAGTTCTTGGGGTTTCCATGGCTTGAACCTCACGAAAGGAACTTGTGA
AA sequence
>Lus10030831 pacid=23155315 polypeptide=Lus10030831 locus=Lus10030831.g ID=Lus10030831.BGIv1.0 annot-version=v1.0
MAPRATKSKALSIDPDAMFAGMIVFLIDNEVQPRRLEIWKQKLMQMGATIEDRFSKKNRHRLERFKGRALLYQWIEESLRLGEKVSEDSYCIDVNSQRSK
SSRNGNDESSPLKKVRSCDPPDTVKSFKVDSSKSDSNSLNESLSPGRTSPKSVCSSNTDLSLEYNPPDLNRNITEIFGKLINIYRALGKDRRSFSYYKAI
PVIEKLPFKIESAEQVKGLPGLGKSLQDHIQEIVTTGKLSKLEHFETDEKVRAITLFGEVWGVGPATALKLYEKGHPTLDDLKNDDSLNNSQKIGLKYFD
DIRTRIPRSEVQEMEQLLQKTGGEILPGVLIVCGGSYRRGKSSCGDMDIVVTHPDGTSHKGFLSKFVKRLKGMEFLREDLVFSTHSEQGTDSGVDTYFGL
CTCPGQELRRWIDFKVYPRDIYAFGLIAWTRNDTLNRRLRLLAESRGFRLDDTGLFPATHSSGGKRGSRATASLKLQTEKEVFEFLGFPWLEPHERNL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10520 AtPol{lambda} DNA polymerase {lambda}, DNA p... Lus10030831
[exp]
0 1
AT1G29630 5'-3' exonuclease family prote... Lus10002782
[exp]
1.7 0.8519
AT4G11410 NAD(P)-binding Rossmann-fold s... Lus10028781
[exp]
4.0 0.8088
AT3G20020 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN A... Lus10010162
[exp]
6.0 0.8473
AT1G09000 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NP... Lus10031506
[exp]
6.9 0.7917
AT5G17430 AP2_ERF BBM BABY BOOM, Integrase-type DNA-... Lus10001185
[exp]
7.0 0.8131
AT4G30870 ATMUS81 ARABIDOPSIS THALIANA MMS AND U... Lus10039566
[exp]
9.5 0.8060
AT3G14890 phosphoesterase (.1.2) Lus10037922
[exp]
9.5 0.7983
AT5G46740 UBP21 ubiquitin-specific protease 21... Lus10032623
[exp]
9.7 0.8355
AT4G01270 RING/U-box superfamily protein... Lus10005127
[exp]
13.1 0.8440
AT5G22220 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2... Lus10005209
[exp]
14.3 0.7902

Lus10030831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.