Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43250 147 / 2e-46 CCAAT NF-YC13 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) AT1G08970 62 / 5e-12 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT1G54830 61 / 1e-11 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT5G63470 61 / 1e-11 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT1G07980 60 / 1e-11 CCAAT NF-YC10 "nuclear factor Y, subunit C10", nuclear factor Y, subunit C10 (.1) AT3G48590 58 / 8e-11 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G50480 58 / 8e-11 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT3G12480 56 / 1e-09 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT5G50490 51 / 3e-08 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G27910 50 / 4e-08 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030657 [exp] 256 / 5e-89 AT5G43250 142 / 2e-44 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) Lus10006169 [exp] 114 / 1e-32 AT1G22380 172 / 3e-51 UDP-glucosyl transferase 85A3 (.1) Lus10016750 [exp] 58 / 1e-10 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10022444 [exp] 57 / 2e-10 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10029939 [exp] 57 / 2e-10 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 57 / 3e-10 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 55 / 1e-09 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10041221 [exp] 55 / 1e-09 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10026780 [exp] 49 / 2e-07 AT5G19490 189 / 1e-58 Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G055000 [exp] 161 / 9e-52 AT5G43250 145 / 1e-45 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) Potri.008G203500 [exp] 60 / 3e-11 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.013G025000 [exp] 59 / 6e-11 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 59 / 7e-11 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.015G097400 [exp] 58 / 1e-10 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.005G035800 [exp] 57 / 2e-10 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.012G098500 [exp] 57 / 2e-10 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.007G070900 [exp] 54 / 3e-09 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.005G094900 [exp] 54 / 4e-09 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.001G225400 [exp] 50 / 9e-08 AT3G12480 180 / 1e-54 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10030832 pacid=23155289 polypeptide=Lus10030832 locus=Lus10030832.g ID=Lus10030832.BGIv1.0 annot-version=v1.0 ATGGTGGAAGAGGAGGAGCAAGTTGAAGATGCGACAATCCGGCAGCAGGAGTTCCCGAACGGCCGAGTGAGGAAGATCATGAGGATCGACAAGGACGTGA ACAAGGTGACATCGGAAGCTCTGTTCGTCGTCGCGCGCTCCACCGAACTGTTCCTTCGCTTTCTCGCGGAGAAATCGGCCGAAGTTGCGTCGGAGAAGAA GCGGAAGATTGTGAAGATCGAACACCTCCGAGCCGCCGTCAAGAGGCACCAGCCGACCAGCGATTTCCTCCTCGACTCGCTTCCGGCGCCGATTCTTCAA TCTCAAGAAGACACTGGCGATGGTGCTGCGGCTCGCCTTCCTCGCGAAGTTGCTCCGAAGCTACTGCCTGCCGGTACTCGCCGGATTGATGATTTCTTCG GTAAATCGACGAGCAGGGCTTCTACTTCAGCTGAGAATCAAGGTTGA
AA sequence Show only first row Show all	>Lus10030832 pacid=23155289 polypeptide=Lus10030832 locus=Lus10030832.g ID=Lus10030832.BGIv1.0 annot-version=v1.0 MVEEEEQVEDATIRQQEFPNGRVRKIMRIDKDVNKVTSEALFVVARSTELFLRFLAEKSAEVASEKKRKIVKIEHLRAAVKRHQPTSDFLLDSLPAPILQ SQEDTGDGAAARLPREVAPKLLPAGTRRIDDFFGKSTSRASTSAENQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030832 [exp]	0	1
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10035209 [exp]	1.0	0.9508
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	4.7	0.9269
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	9.0	0.9185
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	9.1	0.8679
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030657 [exp]	16.2	0.8918
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	19.7	0.9072
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	19.8	0.9002
AT4G17240			unknown protein		Lus10038797 [exp]	21.2	0.8914
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	21.2	0.9094
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	23.8	0.8977

Compare expression of checked genes

Lus10030832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.