Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10522 97 / 1e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030655 [exp] 101 / 5e-27 AT1G10522 170 / 3e-54 unknown protein Lus10030830 [exp] 99 / 2e-24 AT2G28230 305 / 4e-103 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) Lus10030652 [exp] 87 / 1e-08 AT1G10522 62 / 6e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094900 [exp] 105 / 8e-29 AT1G10522 196 / 1e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030834 pacid=23155213 polypeptide=Lus10030834 locus=Lus10030834.g ID=Lus10030834.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCGTACACCGGCTATCTCCACTCTCTTCCACCTCATCCACTCCCCTTATCTCCCGCCAAATCTCCACTCTTCTCAACTTTCAGCACTCCTA ATCGCCACTTCATTTCTCATCCCCCCTCCAGCGTCCGTTTTACTCCAGCATCCAGCTCCAGAGACGTCGCCGGAGCCTCCGTGCCGCCCCAGAAGTACGT TTACCCTGACCCGGATCCCGATTTCGCCAGACGGGAAACGCAGAAGTTTCAGAGCGAATTGAGGAAAAGATTGGTTAAGGAGAAGCAGACATTCGGCGAA GCACTTGACCAAGTAGTGGAAGTTTGTTCTGAGATATTCAGTTGCTTCTTGCACAAGGAGTACGGAGGGCCTGGAACGTTAATGGTGGAGCCATTTACAG ATATGTTCCTAGCTCTCAAGGAGAAGAAATTGCCTGGAGCACCTTTTGCAGCTAGAGCTGCACTTTTGTGGGCTCAGAATCATGTGGATCAGGATTGGCA AGTTTGGCACTCAGACATGCCTCTTCGTTAG
AA sequence Show only first row Show all	>Lus10030834 pacid=23155213 polypeptide=Lus10030834 locus=Lus10030834.g ID=Lus10030834.BGIv1.0 annot-version=v1.0 MAVPYTGYLHSLPPHPLPLSPAKSPLFSTFSTPNRHFISHPPSSVRFTPASSSRDVAGASVPPQKYVYPDPDPDFARRETQKFQSELRKRLVKEKQTFGE ALDQVVEVCSEIFSCFLHKEYGGPGTLMVEPFTDMFLALKEKKLPGAPFAARAALLWAQNHVDQDWQVWHSDMPLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10522			unknown protein		Lus10030834 [exp]	0	1
AT1G74120			Mitochondrial transcription te...		Lus10007988 [exp]	14.1	0.6991
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033435 [exp]	42.0	0.6479
AT2G39210			Major facilitator superfamily ...		Lus10037949 [exp]	60.3	0.6150
AT2G39170			unknown protein		Lus10037961 [exp]	151.7	0.5607
AT1G77122			Uncharacterised protein family...		Lus10028624 [exp]	283.7	0.5567

Compare expression of checked genes

Lus10030834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.