Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60010 126 / 6e-38 unknown protein AT1G10530 108 / 1e-30 unknown protein AT5G50090 102 / 7e-29 unknown protein AT5G62900 95 / 9e-26 unknown protein AT5G67620 89 / 6e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030651 [exp] 218 / 5e-74 AT1G60010 171 / 4e-55 unknown protein Lus10029193 [exp] 170 / 4e-55 AT1G60010 178 / 1e-57 unknown protein Lus10010708 [exp] 170 / 5e-55 AT1G60010 177 / 3e-57 unknown protein Lus10043461 [exp] 110 / 2e-31 AT5G50090 146 / 7e-45 unknown protein Lus10004229 [exp] 108 / 8e-31 AT5G50090 150 / 1e-46 unknown protein Lus10034124 [exp] 108 / 2e-30 AT5G50090 147 / 3e-45 unknown protein Lus10042139 [exp] 102 / 3e-28 AT5G50090 141 / 4e-43 unknown protein Lus10019264 [exp] 77 / 4e-18 AT5G67620 163 / 5e-51 unknown protein Lus10026474 [exp] 39 / 0.0001 ND 47 / 1e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146500 [exp] 143 / 8e-44 AT1G60010 189 / 3e-61 unknown protein Potri.010G095400 [exp] 137 / 4e-42 AT1G60010 187 / 5e-61 unknown protein Potri.012G077300 [exp] 128 / 2e-38 AT5G50090 168 / 1e-53 unknown protein Potri.015G072501 [exp] 127 / 5e-38 AT5G50090 152 / 4e-47 unknown protein Potri.007G005600 [exp] 98 / 1e-26 AT5G67620 184 / 7e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030835 pacid=23155378 polypeptide=Lus10030835 locus=Lus10030835.g ID=Lus10030835.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCAAGCAATTGATGCGGCGGCTTTGGTGATACAGTATCCATGCGGGAAGATTGAGAGGATGTACTGGCCTGTACTCGCCAGCGAAATCA TGACCCTCAACCCTGGTCATTACGTTTCTCTCATCATCCCACTTCCTTCTTCTGATTCTTCTTCGCCGGCGGATCAGGATCTGCAGCCGGCGGCGGTTCA GTTCACACGAGTTAAGCTTCTCAGGCCTACTCATACTCTGGCTCTTGGCCATGCCTACCGCCTTGTTCCTACTCAAGAGGTGGTGAGAGTTTTGAGGGCG AAGAAGTATGCTAAGATGAAGAAACAGCTGCAGGAGGCAGAGCCAGTTGAGGAATCAGAGAAATCTGGTTCAGATGAGAGTTTTCAGTTCCAGGTATAA
AA sequence Show only first row Show all	>Lus10030835 pacid=23155378 polypeptide=Lus10030835 locus=Lus10030835.g ID=Lus10030835.BGIv1.0 annot-version=v1.0 MGNCQAIDAAALVIQYPCGKIERMYWPVLASEIMTLNPGHYVSLIIPLPSSDSSSPADQDLQPAAVQFTRVKLLRPTHTLALGHAYRLVPTQEVVRVLRA KKYAKMKKQLQEAEPVEESEKSGSDESFQFQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60010			unknown protein		Lus10030835 [exp]	0	1
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	2.0	0.9764
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	3.2	0.9683
AT5G41761			unknown protein		Lus10012634 [exp]	3.6	0.9626
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	7.3	0.9705
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	7.3	0.9741
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	8.6	0.9468
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	9.9	0.9657
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	10.4	0.9692
AT3G01430			unknown protein		Lus10014527 [exp]	11.3	0.9640
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	11.5	0.9628

Compare expression of checked genes

Lus10030835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.