Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01015 328 / 8e-108 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G15510 313 / 1e-101 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G37478 72 / 2e-14 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G03780 63 / 2e-10 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT5G44270 46 / 3e-05 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030650 [exp] 661 / 0 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10010706 [exp] 413 / 1e-140 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10029190 [exp] 346 / 1e-114 AT5G15510 365 / 2e-121 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10007382 [exp] 64 / 1e-11 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10020800 [exp] 64 / 1e-11 AT5G37478 148 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10018608 [exp] 62 / 8e-10 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 60 / 4e-09 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 59 / 7e-09 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 44 / 0.0003 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092100 [exp] 358 / 1e-118 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 339 / 3e-111 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G144061 [exp] 73 / 6e-15 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.017G013100 [exp] 70 / 2e-12 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.007G138600 [exp] 59 / 7e-09 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10030836 pacid=23155316 polypeptide=Lus10030836 locus=Lus10030836.g ID=Lus10030836.BGIv1.0 annot-version=v1.0 ATGGAGTCCAGCGTCAAGAAGCACCGGAAACCAACCACTCCGGCAAAGGAACCACCATCGCGATTTCCCCATGGATTCCAGTCCAAGGTTTCGGAGAATT CCGATCCGAACGTCTCCTGCTCAAGTCCAATCGTGGATTATTCCAAATCTGGAGGCAGCAAGTCTAAGAAGCCACCGGGAGCGAAAATCCCCAATTCAAG TCAAACCCTGTCTCTGTACTCGCCCAGGAACAAGCTCAAGGAGCGGAAGTTCGTGGTGGCGAAGAAGAGGGATAACTCGAGGAAGGATGGGGATAAGAAG AAGGTTTGTGATTCTGGTTCAGATTCGGCCGCGAGTGCGATTCATGTAGCGTACGAGAGTCTGAGGGCTTCGCAGGAGGGGTTTTTCAAGGCGGGAAATG ACTACTGCGGAGGAGAATTGGACGAAGGTGATATTGATGTGGAAGAGGTGGAGGGTCCGATTTCGGATGGTAAGGGGAAGCAAGGAAGCTCGACGGTTAA GAGAAGGAGGGAGAAGTTTCTTGAAGAAGCGAGGAAGAGTGTTCCAGAGTGTGGGAAAGTGATGCATTTGGTTAAGGCGTTTGAGCAGCTTTTGACTGTT CCGAAAGGGTCGAAGGAGGAGGAGGAAGAGGAGGAGAAGAAGGTGAATCAATGGGCATTGCCTGGAATGCAGCCGTCCAAGAAAGAAGGATGTGAGATTC AGGAATCTATGTCTTTGATTTGCCCGTCTGATCTGTTCTTGAATTCGGAGAATCTCGGATTGGATTCGAGGCTTTCGACATCTTCTTCGTGGGACGGCAG TCACGGGAGTAGGCCATCAAGTGGAGGAAGGAGAAGTAGACGAAATAGCGTTGAATCTTGTTCGACTATGGGTGGAGGGAATAGATTGAAGAAAAAGCAG CAGCCAAAAGTCACCAGTCAAAAGCCTTTTAAACTGAAGACAGAGCAAAGGGGGAAAATGAAGGAGGAGGAATTCGTGAAGAAGGTTCATGAAATGATGA CAGTAGAGGAGAGGCAGCGCATTCCGGTTGCTCAAGGTCTTCCATGGACAACTGATGAGCCTCAGCACCTTGTTAAACCACCAGTGAAGGAGGCCACATC GCCAATCGATCTGATGCTTCACAGTGATGTACGTGCAGTAGAGCGTGCTGAATTCGACAGCCAGGTAGCAGAGAAGCTGACTCTGATTGAGGAGTACAAG ATGGAAAGAGAGAGGCTGCAAAAGCTGGCTGAGGAGGAGGAATTACGAAGACTGAAAAAGGAACTCGTTCCGAAAGCACAGCCAATGCCTTACTTTGACA GACCATTCATGCCCAGAAGGTCAATGAGGCAACCAACAGTCCCGAAAGAACCAAAGTTCCGCTTACCTCACCATAAGAAGATCAAGAGCGGCGGCACATC ATCATGGAATGAACATCAGTGA
AA sequence Show only first row Show all	>Lus10030836 pacid=23155316 polypeptide=Lus10030836 locus=Lus10030836.g ID=Lus10030836.BGIv1.0 annot-version=v1.0 MESSVKKHRKPTTPAKEPPSRFPHGFQSKVSENSDPNVSCSSPIVDYSKSGGSKSKKPPGAKIPNSSQTLSLYSPRNKLKERKFVVAKKRDNSRKDGDKK KVCDSGSDSAASAIHVAYESLRASQEGFFKAGNDYCGGELDEGDIDVEEVEGPISDGKGKQGSSTVKRRREKFLEEARKSVPECGKVMHLVKAFEQLLTV PKGSKEEEEEEEKKVNQWALPGMQPSKKEGCEIQESMSLICPSDLFLNSENLGLDSRLSTSSSWDGSHGSRPSSGGRRSRRNSVESCSTMGGGNRLKKKQ QPKVTSQKPFKLKTEQRGKMKEEEFVKKVHEMMTVEERQRIPVAQGLPWTTDEPQHLVKPPVKEATSPIDLMLHSDVRAVERAEFDSQVAEKLTLIEEYK MERERLQKLAEEEELRRLKKELVPKAQPMPYFDRPFMPRRSMRQPTVPKEPKFRLPHHKKIKSGGTSSWNEHQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	0	1
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	1.7	0.9620
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	3.5	0.9501
AT5G44040			unknown protein		Lus10032776 [exp]	5.5	0.9463
AT1G11800			endonuclease/exonuclease/phosp...		Lus10020021 [exp]	6.2	0.9367
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10022324 [exp]	7.9	0.9493
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	8.4	0.9467
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	8.9	0.9448
AT1G65710			unknown protein		Lus10010952 [exp]	9.2	0.9488
AT2G34190			Xanthine/uracil permease famil...		Lus10029238 [exp]	11.5	0.9057
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	12.6	0.9421

Compare expression of checked genes

Lus10030836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.