Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24040 275 / 4e-91 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT1G72030 42 / 0.0004 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030649 [exp] 516 / 0 AT1G24040 276 / 2e-91 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10042534 [exp] 41 / 0.0007 AT1G72030 179 / 3e-55 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G095800 [exp] 304 / 3e-102 AT1G24040 287 / 4e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.008G146000 [exp] 295 / 2e-98 AT1G24040 317 / 9e-108 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.005G054600 [exp] 49 / 1e-06 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10030837 pacid=23155374 polypeptide=Lus10030837 locus=Lus10030837.g ID=Lus10030837.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTCCAACACTCCCCCTATCTCTAACTCCCACATCTTCCTCTTCAGACACGTCACTCCCTTCTTCCTTTCACAGACCCCGATTCCTCCTCC CCCACCATTTCTCCACATCTCACCCATCCCGATTCCGCCGCCTAATCCCCAAACCCTCCTGCTCCGGCGAATCCACCACCAGCATCATCAGTGCTTCCTC CGTCTACTCCGACCTAGAGCCGTGGCTGAAGAACGGGAGCTACAGCTTCCTCACCAACGACGAGCTCCTCAAGCTGAAAACCCTCCAAGACTTCCGGTGC CGAGCTGAATTGGAAACTGGATCGATCTCCGTCAGGGTAATGCGGCCGGAGGAGACCGATTCGACCGTCGGATTGCTCGCCGTCTCGTTCGTTGAGTCCA TGAAGCTTCCCGATTGGTACTTGACTTTGATTAGCTTCTTGGTGAAGCAGTACTTGATTGAGCGGCGATCTGCGATTCCGAATGCCGTTACTCTGCTAGG GTTCTATAAACGGAAAGAAGACGGCGTAGACGGCGACGAGGAAGATGAAGATGAAGGGGAGTTGGCAGGGACGGTGGAGGTTAGTTTCAATAAGAGAGGA GTGAGTGATTCTCCTCCGACGCCTACGCACCCCAAGGACTCTCCTTACATCTCCAACATGACTGTTAACAAGCCATTTCGAAGGAGACGAATTGGTTGGA ATCTTCTGAAAGCAAGTGAGGAACTGATCTCTCAAATGAGTAGTGTGAGAGAGGCGTATCTGCACTGTAGGATGATTGATTCGGCACCGTTTAACATGTA CATAAAAGCAGGCTACAATGTTGTTAAGACGGATAGCATACTCGTATTGTTGCTGTTGCAACCTCGCAAACATTTGATGTTGAAGAAGCTTCCAGCACCG ACAACCGACGAGGATTTGGAGCTCGACTTCTCGGGCTCTGACCTGGAAGAAGTGCAAGTAATCTATGATATTGCTGCTAAGAACCGTGGTTCTTCTCCTA CAGCCAATTCGGATGGATCGGCATTACTCCCCTTAGATGGATCGTGA
AA sequence Show only first row Show all	>Lus10030837 pacid=23155374 polypeptide=Lus10030837 locus=Lus10030837.g ID=Lus10030837.BGIv1.0 annot-version=v1.0 MAAAPTLPLSLTPTSSSSDTSLPSSFHRPRFLLPHHFSTSHPSRFRRLIPKPSCSGESTTSIISASSVYSDLEPWLKNGSYSFLTNDELLKLKTLQDFRC RAELETGSISVRVMRPEETDSTVGLLAVSFVESMKLPDWYLTLISFLVKQYLIERRSAIPNAVTLLGFYKRKEDGVDGDEEDEDEGELAGTVEVSFNKRG VSDSPPTPTHPKDSPYISNMTVNKPFRRRRIGWNLLKASEELISQMSSVREAYLHCRMIDSAPFNMYIKAGYNVVKTDSILVLLLLQPRKHLMLKKLPAP TTDEDLELDFSGSDLEEVQVIYDIAAKNRGSSPTANSDGSALLPLDGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	0	1
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	5.0	0.7884
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007954 [exp]	6.1	0.8289
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	6.9	0.7974
AT5G45275			Major facilitator superfamily ...		Lus10033270 [exp]	7.7	0.7521
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	12.2	0.7855
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	16.6	0.7452
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	18.2	0.8015
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	19.3	0.7690
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001052 [exp]	19.7	0.7791
AT5G63380			AMP-dependent synthetase and l...		Lus10002791 [exp]	19.7	0.7685

Compare expression of checked genes

Lus10030837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.