Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030647 [exp] 134 / 4e-41 ND / Lus10029182 [exp] 61 / 4e-11 AT1G24020 88 / 1e-20 MLP-like protein 423 (.1.2) Lus10029184 [exp] 60 / 6e-11 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2) Lus10010698 [exp] 59 / 1e-10 AT1G24020 94 / 2e-22 MLP-like protein 423 (.1.2) Lus10010701 [exp] 54 / 3e-09 AT1G24020 80 / 3e-19 MLP-like protein 423 (.1.2) Lus10029185 [exp] 52 / 1e-08 AT1G24020 80 / 2e-19 MLP-like protein 423 (.1.2) Lus10030840 [exp] 51 / 2e-08 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10003451 [exp] 44 / 6e-06 AT1G24020 73 / 7e-17 MLP-like protein 423 (.1.2) Lus10001042 [exp] 41 / 8e-05 AT1G24020 69 / 5e-15 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10030838 pacid=23155193 polypeptide=Lus10030838 locus=Lus10030838.g ID=Lus10030838.BGIv1.0 annot-version=v1.0 ATGATTTCTGGGGGTCTCTGTTTGCCTCAACGGAATTACTCCCTAAAGCCCACGAAAGCGTGTATGCACGTCGACAAAGGCGACGGCTTCACCGAACATT CCGTCCGCCGAATCGATTTTGCTCGAGGTACGTACCCGCAGTGGAAGAATTGGGCGGAGCAGATAATGCGGGTGGATCAAGAAAAGAAGACGGTGGAGCT GTCGGCGGTGAGCGGAGGTCCGTTGAGTGAATGCGGTATTTTCAAGAGAACGGTGGTGGTGAGTCCTAGAATGAGCAGTCCAATGCGACAGGGTTCTTAT GTGAAATGGAGTTCTTGTTACACCGATTTAAAGGGAACGTTTCGTGTGAAAGACATGGCGGACTTGGTTGAATCTACTTTCAATAAACTCGACGAGAATC TCCTCAGGGACGCCGACAGAGCCTCTGCATACCAATTATCTTATACAAAGTATTCGAGTTTCATGTTTGTTGTACTATTTACAGTTTGA
AA sequence Show only first row Show all	>Lus10030838 pacid=23155193 polypeptide=Lus10030838 locus=Lus10030838.g ID=Lus10030838.BGIv1.0 annot-version=v1.0 MISGGLCLPQRNYSLKPTKACMHVDKGDGFTEHSVRRIDFARGTYPQWKNWAEQIMRVDQEKKTVELSAVSGGPLSECGIFKRTVVVSPRMSSPMRQGSY VKWSSCYTDLKGTFRVKDMADLVESTFNKLDENLLRDADRASAYQLSYTKYSSFMFVVLFTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030838 [exp]	0	1
					Lus10020530 [exp]	1.0	0.7781
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Lus10003458 [exp]	3.0	0.7601
AT3G52470			Late embryogenesis abundant (L...		Lus10027133 [exp]	6.2	0.7612
					Lus10012416 [exp]	10.0	0.7519
AT1G69630			F-box/RNI-like superfamily pro...		Lus10031499 [exp]	11.4	0.7165
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10032941 [exp]	11.5	0.6645
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	17.1	0.6638
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	18.3	0.6638
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	19.4	0.6638
					Lus10000351 [exp]	20.5	0.6638

Compare expression of checked genes

Lus10030838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.