Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 189 / 2e-62 MLP423 MLP-like protein 423 (.1.2) AT1G70830 96 / 1e-25 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70840 95 / 3e-25 MLP31 MLP-like protein 31 (.1) AT1G70890 94 / 9e-25 MLP43 MLP-like protein 43 (.1) AT1G70850 94 / 7e-24 MLP34 MLP-like protein 34 (.1.2.3) AT5G28010 87 / 4e-22 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70880 86 / 6e-22 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G35260 84 / 6e-21 MLP165 MLP-like protein 165 (.1) AT5G28000 78 / 9e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G23130 77 / 3e-18 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030646 [exp] 314 / 1e-111 AT1G24020 189 / 3e-62 MLP-like protein 423 (.1.2) Lus10010701 [exp] 95 / 6e-25 AT1G24020 80 / 3e-19 MLP-like protein 423 (.1.2) Lus10029185 [exp] 91 / 1e-23 AT1G24020 80 / 2e-19 MLP-like protein 423 (.1.2) Lus10010698 [exp] 92 / 5e-22 AT1G24020 94 / 2e-22 MLP-like protein 423 (.1.2) Lus10029182 [exp] 91 / 8e-22 AT1G24020 88 / 1e-20 MLP-like protein 423 (.1.2) Lus10029183 [exp] 82 / 2e-19 AT1G24020 73 / 6e-16 MLP-like protein 423 (.1.2) Lus10029184 [exp] 84 / 4e-19 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2) Lus10010700 [exp] 79 / 1e-18 AT1G24020 74 / 4e-17 MLP-like protein 423 (.1.2) Lus10010702 [exp] 82 / 2e-18 AT1G24020 79 / 4e-17 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 233 / 6e-80 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.008G131200 [exp] 85 / 2e-21 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131100 [exp] 77 / 2e-18 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.008G131300 [exp] 76 / 6e-18 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.017G051100 [exp] 76 / 9e-18 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.010G111000 [exp] 73 / 6e-17 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.004G032900 [exp] 69 / 2e-15 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.004G033000 [exp] 69 / 3e-15 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.013G131000 [exp] 66 / 6e-14 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2) Potri.017G051200 [exp] 63 / 2e-13 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10030840 pacid=23155215 polypeptide=Lus10030840 locus=Lus10030840.g ID=Lus10030840.BGIv1.0 annot-version=v1.0 ATGGCAGCAAGAGCAGGAACGCTGGAAGTTGACGTGGAGATCAAGTCTCCGGCGGACAAGTTCTGGGAGAACATCAGAAACTCCACCACTCTGTTCCCTA AGCACTTTCCTGACCAGTACAAGACCATTGAGGTCCTTGAAGGTGATGGCAAAGCTGTTGGCTCTGTCCGCCTCTTCACCTATGCCGAAGGTTCGCCGCT TGTGAAGCTGTCGAAGGAGAGGATCGACAGCGTGGACGAGGAGAAGAAGTCGGTCTCGTACAGCGTGATCGAAGGAGATCTGCTCAAATACTATTGCACA TTCAAAGGGCACATAGTGGTGTCCCCAAAGGATGCGGAGAAAGACGGGTGCTTGGTTAAATGGACGTGCGAGTACGAGAGGGTCAGCGACGACGTGGAAG TCCCTCACGTCATCAAGGACTTCGTCGTCAAGAACTTCAAAGAAGTCGATGATTTGACCTTGGCGGCCAAGGCGGCCTGA
AA sequence Show only first row Show all	>Lus10030840 pacid=23155215 polypeptide=Lus10030840 locus=Lus10030840.g ID=Lus10030840.BGIv1.0 annot-version=v1.0 MAARAGTLEVDVEIKSPADKFWENIRNSTTLFPKHFPDQYKTIEVLEGDGKAVGSVRLFTYAEGSPLVKLSKERIDSVDEEKKSVSYSVIEGDLLKYYCT FKGHIVVSPKDAEKDGCLVKWTCEYERVSDDVEVPHVIKDFVVKNFKEVDDLTLAAKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	0	1
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	2.0	0.9120
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	3.7	0.9057
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	4.2	0.9050
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	4.6	0.8771
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	4.9	0.8857
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	5.7	0.8941
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	6.3	0.8889
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	8.9	0.8759
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	9.5	0.8638
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	9.9	0.8685

Compare expression of checked genes

Lus10030840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.