Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26830 1006 / 0 Threonyl-tRNA synthetase (.1) AT2G04842 415 / 1e-136 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT1G17960 374 / 5e-123 Threonyl-tRNA synthetase (.1) AT1G18130 162 / 1e-46 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030645 [exp] 1191 / 0 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10005351 [exp] 1157 / 0 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10021402 [exp] 1155 / 0 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10012360 [exp] 401 / 7e-131 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030843 [exp] 272 / 3e-86 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 165 / 7e-48 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1) Lus10030642 [exp] 91 / 5e-22 AT1G17960 79 / 9e-19 Threonyl-tRNA synthetase (.1) Lus10006406 [exp] 81 / 1e-17 AT2G04842 203 / 6e-63 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030584 [exp] 47 / 4e-05 AT3G54630 471 / 7e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145600 [exp] 1074 / 0 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.010G096500 [exp] 795 / 0 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1) Potri.014G162200 [exp] 410 / 3e-134 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Potri.010G096550 [exp] 211 / 5e-64 AT1G17960 219 / 2e-69 Threonyl-tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10030841 pacid=23155297 polypeptide=Lus10030841 locus=Lus10030841.g ID=Lus10030841.BGIv1.0 annot-version=v1.0 ATGGCCGCCGATCATCCGAAGGACGAAGAGTATCTGAAGGCAGTGATTCCGAAACGAATCGAGCTCTTTGAGTCCATCCAAGAGCAGCAGAAGCTGGAGC TCGATTCTCGCCCTCATGAAGATATCAAGATTACTTTGCAGGATGGGACGGTGAAGGAAGGTAAGAGGTGGTCGTCGAGTCCTTGGGACATTGCGAAGGA GATCTCTAAGACCGATGCATTGATTTCTCAAGTCAATGGAGAGTTGTGGGATTTGAAACGGCCTTTCGAAAGTGATTGTGAGCTGAAATTGTTTACCTTC GAAGACGATGAAGGGCGTGATGCTTTCTGGCACTCCAGCGCTCATATTCTTGGCCAGTCATTGGAACAGACATATGGTTGCAAGCTCTGCATTGGACCTT GCACCACAAAAGTGGAGGGATTCTATTACGATGCGTTCTATGGAGAACTCAGTTTGAATGAGGATCACTTGAAGAAAATCGAAGCTGAAACCTCGAAAGT TGCTGAGCAAGCACAAGAATTCGAGCGTATCGAAGTCACAAAGGAACAGGCCCTTGAGATGTTCTCCGACAACAACTTTAAGGTTGAAATCATAAACGAT CTGCCTGAGAATGAAACTGTGACAGTGTACAGATGTGGTCCATTGGTAGATATGTGTCGCGGTCCACATATCCCGAACACATCTTCTGTTAAGGCACTTG CATGCTTGAAGGCTTCTTCTTCTTATTGGAAGGGGGACAAGGACCGTGAAAGTTTGCAGAGAGTCTACGGTATATCATATCCTGACGAGGAGTGGCTGAA GGACTATAAAACCAATCTGGAAAAACTAAAGGAGTATGATCACAGGGTATTGGGGACTAAGCAGGAGCTTTTCTTCTGCCATCCTCTAAGCCCGGGAAGT TGGTTCTTCCTTCCTCGCGGGACACGGATATACATTAAACTACAGGAATTTATTAGAGCTCAATATCGGGAGAGGGGTTATGACGAGGTTATATCCCCAG ATATCTTCAACATTGAACTCTGGGAGACATCGGGGCACGCTAAAAACTACAAGCAAAACATGTTCTTGCTTGATATCGACAAGCAAGAATTTGGACTGAA ACCAATGAATTGTCCTGGCCATTGTTTGATATTCCGGGAGAAAGTTCGATCTTACAGAGAACTACCTCTCCGTCTGGCAGATTTCGGCTGTTTGCACCGA AATGAGGCTAGTGGTGCGCTCACAGGATTAACTCGCGTTCGAAGGTTTCAACAGGATGATGCCCATATCTTCTGCAGGGAGAGCCAAATAAAAGATGAAG TGAGAGGTGTTTTGGAATTTATTGATTCCGTGTACAAAGTATTTGGATTCGAATACGAGCTGAAGCTCTCTACGAGGCCAGAAAATTACGAGGGGGAATT GAAAACATGGGCCAAAGCCGAGGCTGCTCTGACTGAAGCGTTGGATGAGTTTGGGAAGCCTTGGCAGATTGATGAAGGCGATGGTGCTTTCTACGGTCCT AAGATAGACATTAGCGTATGCGATGCATTGAAAAGGAAGCACCAGTGTGCTACATTGCAGCTCGACTTCCAGCTGCCAAGGAAATTCGATTTGAAGTACT CGACGGAGTACTCCTCCGCAGAGGATGAAGACAAGTTTGAAAGACCAGTGATGATACACAGGGCCATACTGGGATCTGTGGAGCGTATGATGGCTATACT GGTGGAGCACTACAAGGGGAAGTGGCCTTTCTGGCTAAGTCCTCGTCAAGCAATCGTCTGCCCCGTATCTGACAAGTCTATGGACTATGCTAAAAAAGTA CGTGATCGGATTCACGCAGCAGGATATGATGTTGATGCTGATTTAACTGACAGAAAGATCAATAAAAAGATCAGAGATGCCCGGGAATCACAGTACAACT ACATACTAGTCGTGGGAGAAAGGGAAGCCGCGAATGGCCAGGTGAGTGTACGGGAGAGAGGTAACGAAGAACACTCGGTTAAGAGCATCGAAAGCTTGCT GCAAGATTTCAAGGATGAAGCTTAG
AA sequence Show only first row Show all	>Lus10030841 pacid=23155297 polypeptide=Lus10030841 locus=Lus10030841.g ID=Lus10030841.BGIv1.0 annot-version=v1.0 MAADHPKDEEYLKAVIPKRIELFESIQEQQKLELDSRPHEDIKITLQDGTVKEGKRWSSSPWDIAKEISKTDALISQVNGELWDLKRPFESDCELKLFTF EDDEGRDAFWHSSAHILGQSLEQTYGCKLCIGPCTTKVEGFYYDAFYGELSLNEDHLKKIEAETSKVAEQAQEFERIEVTKEQALEMFSDNNFKVEIIND LPENETVTVYRCGPLVDMCRGPHIPNTSSVKALACLKASSSYWKGDKDRESLQRVYGISYPDEEWLKDYKTNLEKLKEYDHRVLGTKQELFFCHPLSPGS WFFLPRGTRIYIKLQEFIRAQYRERGYDEVISPDIFNIELWETSGHAKNYKQNMFLLDIDKQEFGLKPMNCPGHCLIFREKVRSYRELPLRLADFGCLHR NEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDSVYKVFGFEYELKLSTRPENYEGELKTWAKAEAALTEALDEFGKPWQIDEGDGAFYGP KIDISVCDALKRKHQCATLQLDFQLPRKFDLKYSTEYSSAEDEDKFERPVMIHRAILGSVERMMAILVEHYKGKWPFWLSPRQAIVCPVSDKSMDYAKKV RDRIHAAGYDVDADLTDRKINKKIRDARESQYNYILVVGEREAANGQVSVRERGNEEHSVKSIESLLQDFKDEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030841 [exp]	0	1
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	8.5	0.8322
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	74.9	0.7783
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10007326 [exp]	79.6	0.7898
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041685 [exp]	81.1	0.7974
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	119.6	0.7655
AT1G15530			Concanavalin A-like lectin pro...		Lus10014037 [exp]	119.7	0.7437
AT3G15760			unknown protein		Lus10043269 [exp]	123.8	0.7492
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	124.7	0.7502
					Lus10015147 [exp]	153.9	0.7550
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	159.2	0.7482

Compare expression of checked genes

Lus10030841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.