Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 234 / 2e-74 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40230 221 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 220 / 4e-69 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40210 211 / 4e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 195 / 1e-59 EamA-like transporter family (.1) AT3G28130 185 / 9e-56 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 182 / 2e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28100 179 / 2e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28080 179 / 2e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G44800 177 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030645 [exp] 449 / 1e-150 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10039479 [exp] 247 / 2e-79 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 239 / 3e-76 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 231 / 3e-73 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 221 / 7e-70 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 216 / 8e-68 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 198 / 1e-60 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039430 [exp] 194 / 2e-59 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 196 / 7e-59 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337100 [exp] 246 / 5e-79 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 235 / 4e-75 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 228 / 5e-72 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G145800 [exp] 224 / 7e-71 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 215 / 4e-67 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 179 / 7e-53 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 177 / 1e-52 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 176 / 5e-52 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 176 / 7e-52 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 174 / 2e-51 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10030842 pacid=23155355 polypeptide=Lus10030842 locus=Lus10030842.g ID=Lus10030842.BGIv1.0 annot-version=v1.0 ATGGCTGGTATAGGAGTAACAGCGGTAATGGTGGCATTGGAAGTTGTGGAAGTGGGAGTAAGTACCGTTTTCAAAGCAGCGATGGACGACGGCCTCCTGA ACCAGTTCGTCTTTATCGTTTACTCGAACGTCTTGGCACTTCTCGTGATCTCCGCAAGTTGCTCGCTCTTCTACAGGAAGAGGGCTTTCCCCATGCTGAC TTGGAACATAGTCTTCAGGATCCTGCTTCTGGCCATTATCGGGTTTTTTGTGCAGATACTGTTGGTAGTTGGAGTGAAGTACAGCTCTCCGACAATGAAC TCTGCAATGCTTGATCTCACCCCTGCTTATACCTTCTTGCTCGCTCTAGTCTCGAGGATGGAAAAGTTGGACTACAAATCGAGGAGCAGTCAGGCCAAGT TGATCGGGACCGCTGTTTCAATTGCCGGAGCTTTGATCATCACTTTATACAAAGGTCAACCAATTCAGACTATGAAGCTTCAGCTTGTGATGTCCGATTG GGTACTCGGAGGCATTTTCTGTGCAGCTGGTTCGCTCAGCCTAGCATTGGGGTATGTTGTAATGTCGTGGGTTATGAAGGACTACCCCGAAGAATTGATC GTGATGCTCGTAGCTTCGTTCATGGGCACGACACTATGTACCGCAGCTTCTTTGGTTCTGGTGCATGATCCAAGTGCATGGGCAGTAAGGATGGATATTG GACTATTAGCTACTGCATCCAGTGGTATCTTGTGCATAGCTCTTAAAGGTTCAGTGCATGCATGGGCCTTGAAGATGAAAGGACCAGTTTATGTTGCCAT GTTCAAGCCACTTGGGATGGTTATTGCAATGGCTCTAGGGATTATGTTCCTTGGAGACTCTGTTTTTCTTGGAAGGGTGATTGGAGCGGTGATTATCGCG TTAGGATTTTATGTCGCGATGTGGGGTAAAGCTCGAGAACTTGAGGCAGTTGTGGAAGATCATTATCATGTTGGGGAATCTAGAGTTGCTTTTTTGAAAG ACCAGAATCCAGATGTGACGTCTTGA
AA sequence Show only first row Show all	>Lus10030842 pacid=23155355 polypeptide=Lus10030842 locus=Lus10030842.g ID=Lus10030842.BGIv1.0 annot-version=v1.0 MAGIGVTAVMVALEVVEVGVSTVFKAAMDDGLLNQFVFIVYSNVLALLVISASCSLFYRKRAFPMLTWNIVFRILLLAIIGFFVQILLVVGVKYSSPTMN SAMLDLTPAYTFLLALVSRMEKLDYKSRSSQAKLIGTAVSIAGALIITLYKGQPIQTMKLQLVMSDWVLGGIFCAAGSLSLALGYVVMSWVMKDYPEELI VMLVASFMGTTLCTAASLVLVHDPSAWAVRMDIGLLATASSGILCIALKGSVHAWALKMKGPVYVAMFKPLGMVIAMALGIMFLGDSVFLGRVIGAVIIA LGFYVAMWGKARELEAVVEDHYHVGESRVAFLKDQNPDVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10030842 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	9.7	0.9990
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10016916 [exp]	11.1	0.9936
					Lus10033811 [exp]	13.9	0.9990
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	14.1	0.9974
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	17.1	0.9990
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	19.7	0.9990
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10037776 [exp]	22.0	0.9990
AT4G34810			SAUR-like auxin-responsive pro...		Lus10007561 [exp]	23.4	0.9874
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10036445 [exp]	24.1	0.9990
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	26.1	0.9990

Compare expression of checked genes

Lus10030842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.