Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26830 247 / 5e-77 Threonyl-tRNA synthetase (.1) AT1G17960 229 / 1e-72 Threonyl-tRNA synthetase (.1) AT2G04842 167 / 2e-47 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT1G18130 92 / 6e-23 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021402 [exp] 274 / 1e-87 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10005351 [exp] 274 / 2e-87 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 271 / 2e-86 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030645 [exp] 254 / 7e-78 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 223 / 2e-74 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1) Lus10012360 [exp] 164 / 3e-46 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10006406 [exp] 50 / 9e-08 AT2G04842 203 / 6e-63 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145600 [exp] 264 / 2e-83 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.010G096500 [exp] 256 / 8e-83 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1) Potri.014G162200 [exp] 168 / 1e-47 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030843 pacid=23155395 polypeptide=Lus10030843 locus=Lus10030843.g ID=Lus10030843.BGIv1.0 annot-version=v1.0 ATGTTTGTTTCTCTCCTCTGCAATGCAAGGCTCCAATCATGTTACCGTCGATCTTTCTCGTCGTCGGCCGTAACCGCAATTGCTGCTGCCAACGAAGAGT ATCTGACGGCAGTGATTCCGAAACGTGTCCAGCTCTTTCAGTCCATCCAGGAGCGGCAGTGGCTGTATATTGATGAAATATTTGTCCTGTCTCGTTTATA TTCTCGAGTTTTTTTCGTTCTAAAGGATGATGCACATATCTTCTGCAGGGAGAGCCAGATAAACAATGAAGTGAGAGGTGTCCTGGAATATGCTGATTAC GTATATAAAGTACTTGGATTCGAATATGAGCTCAAGCTCTCTACGAGGCCAGAAAAATACCTCGGGAAATTGGAAACATGGAACAGAGCTGAGGCTGCTA TGAAAGAAGCGCTGAACGAATTTGGGAAGCCGTGGCAGAAAGATGAAGGCAATGGTGCTTTCTACGGTCCTAGGATAGATATTATCGTATCCGGTGCATT GAAAAGGAAACACGAGTTTGCCAAATTGCAGCTCGACTTCCAGCTTCCGGATATTTTCAAGTTGAAGTACTCCGCAAAGGACGGAGTCAAGTTCGAAAGA CTAGTGATGATACACACGACCATCGTTGGCTCGTTGGAGCGTATGTGTGCTTTACTGCTGGAGCACTACAGGGGAAATTGGCCTTTTTGGTTAAGTCCTC GTCAAGTAATCGTCTGCCCTTTCTCTGCCGAATATAAGGACTATGCTAAAAAACCTAACGAACCCGATGTTCTACAGGTGCGTATATCGAACAGAGGTAA AGGAAATCACTAG
AA sequence Show only first row Show all	>Lus10030843 pacid=23155395 polypeptide=Lus10030843 locus=Lus10030843.g ID=Lus10030843.BGIv1.0 annot-version=v1.0 MFVSLLCNARLQSCYRRSFSSSAVTAIAAANEEYLTAVIPKRVQLFQSIQERQWLYIDEIFVLSRLYSRVFFVLKDDAHIFCRESQINNEVRGVLEYADY VYKVLGFEYELKLSTRPEKYLGKLETWNRAEAAMKEALNEFGKPWQKDEGNGAFYGPRIDIIVSGALKRKHEFAKLQLDFQLPDIFKLKYSAKDGVKFER LVMIHTTIVGSLERMCALLLEHYRGNWPFWLSPRQVIVCPFSAEYKDYAKKPNEPDVLQVRISNRGKGNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030843 [exp]	0	1
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	9.7	0.9993
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10023114 [exp]	10.0	0.9976
AT5G04350			Plant self-incompatibility pro...		Lus10029383 [exp]	13.7	0.9993
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10016916 [exp]	15.7	0.9934
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	15.8	0.9931
AT4G34810			SAUR-like auxin-responsive pro...		Lus10007561 [exp]	16.4	0.9903
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	16.8	0.9993
					Lus10002413 [exp]	19.4	0.9993
					Lus10014857 [exp]	21.7	0.9993
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10033153 [exp]	23.7	0.9993

Compare expression of checked genes

Lus10030843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.