Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 764 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 718 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 718 / 0 EFR EF-TU receptor (.1) AT3G47090 715 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 706 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 458 / 4e-143 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 438 / 5e-135 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 427 / 3e-133 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 423 / 1e-131 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 421 / 6e-131 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030846 [exp] 1515 / 0 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 1422 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1234 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1231 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1221 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1211 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1201 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1183 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1177 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 938 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 927 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 912 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 909 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 907 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 894 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 894 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 882 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 878 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 875 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030845 pacid=23155370 polypeptide=Lus10030845 locus=Lus10030845.g ID=Lus10030845.BGIv1.0 annot-version=v1.0 ATGGGATCCAGAAATTTGAGTGTTAACGTTGTGGTTGCAGCAGCACTTATTCAGTTGTTGTGCTGTTATTCGTCCTCGTTTGGAAGTAATGAGACAGATC GGCTGGCTCTACTAAGTTTCAAGTCCATGATTACCGATGATCCTTTGGGTGCATTGAGCTCATGGAATGATTCCACCCATTTTTGCCGGTGGTATGGTGT GTCTTGTTCTAGAAGGCACTTCGATAAAGTCGCTGCTGTGCGTCTACCAATTGCAGAACTTTCTGGCTCTATCTCGCCGCATATTGGTAACCTCAGCTTT TTGAAAGTGCTAAATCTCTCTAACAATATGTTCGTTGGGGGAATCCCTCATGAAATCGGCCGCCTTCGTAGATTGCAACATTTGGCGCTTTATAACAACT CATTTGGTGGTGAAATTCCAATCAACATCTCAAGATGCTCTGCTCTTACTTTGTTACGGGTAGACAAAAACAAGTTGGTGGGTGGACTACCATGGCAGCT TGGTCGGTTGAACAAACTCCAAAAGTTTTCTGTAAGTTCAAACAACCTTAGTGGAAGCATCCCACCTTCTTTCGGCAACTTGTCATCTCTGCAAGTTCTG CATGCTTATGAAAACCAAATGAGTGGGAGACTTCCTGATGCTCTAGGCCAATTGAAAAGTCTCCAATATCTAGATTTGGCTTTCAATAAGTTATCTGGTG AAATTCCTGCTTCCATTTTCAACATTTCTTCTCTCGTAGACATGTGGTTTGGAGACAACCAATTCAATGGCAGTCTTCCTTGGGACCTTGGAATATCACT TCCAAATCTTGAGGTGTTTGATGTGGAGGATAACTATATTACCGGTAGTCTTCCACCTTCCTTATCCAATGCCTCTACTTTGGTTACACTACAAGTCAGC ACCAACAAATTTACAGGAAGTGTTCCTAGTATGAAAAGCTCTAACAAGCTTCTCTCCTATCTAATTTATTACAACTCTCTGGGGAGCGGGAAAGCTGGTG AGTTAGGTTTCATGTCCTCATTGACTAATGCTACGAGTTTGGAATACCTGGATATTGGCGGGAATAATTTTGGAGGCACCTTACCAAAGCATATGGCCAA TTTGTCAACCAACATGAAGTTTCTAGTCTTCAGTGAAAATAAAATATCTGGAAACATTCCACAAGACATACAACGCTTTGTCAACTTGGAGATGCTCGCA GGATATAACAATCTCCTGTCTGGCACAATCCCACATAGCATCGGGAACCTACACTCTCTAAAGAATATGTACTTGCTAAACAACCATCTTTCAGGATGTA TTCCATCCTCTATAGGAAACCTGACCGAGCTTATCGACGTGCGTATAAGCAATAACAATTTGCAAGGAGAAATTCATGCGTCTATTGGGAATTGTCAAGA ATTATTAATGCTAGACCTTGGCGACAACAATCTTAGTGGTGCAATCCCGCCACAACTTTTGAGCCTCGCGTCCTTGTCAAAAAATCTGAACTTGTCTAAC AATAAATTCAGCGGTTCCATTCCAATGGAGGTAGGGAGCCTGAAAAATCTGGGTTCACTCGATCTATCTCATAATATTTTGTCAGGCAATATTCCAAGCA GTTTGGGTGGTTGTGCGAGTCTAGAGCTTTTACGGTTGCAAGGAAATCTCCTACAAGGTACTATTCCGGAATCATTGAGTTCATTGAAAGGTCTTCGAGT TTTGGATCTCTCTTCCAATAACTTAACAGGTCAAATTCCTAACTTCTTGGAGCACATGGATATCTCGCAATCTCTGAACTTATCTTATAACAACTTCGAG GGTGAAGTGCCTGATCAAGGAGTCTTCAGAAATACTAGCATCGTCTCTGTTATTGGGAATGCCAAGCTCTGCGGTGGAATGGATGAACTTAAGTTTCCTC TATGTTACTTCACCAAACCGTCAAAAAAGACGTTCAATCGTAAGTGGAAGGTTGTAATAGCAACAATCTGTGGTCTAGGTTTCCTTGCCTTAATGACTTC TTGCTTGTTTATCTTTTGGAAAAGGAGCAAAAAAGTTTCAGTTCCGGCCAATGCTCTGCAACTACCACTGCCTTACAAAAGGCTCTACACGGCTACAAAT GGATTCTCATCAACGAATTTGATTGGAGTGGGTAGCTTTGGCTCCGTGTATAAGGGAGTCCTTAATGAGAATGGGATTGATACTAATATTGCGGTGAAAG TATTTAACCTTGAGCGACATGGTGCTTCCAAGAGCTTTATGGCAGAATGTGAAGCGTTGAAGAATATAAAACATAGAAACCTTGTGAGGATAATGACAGT ATGTTCAAGTGTTGATCATGAAGGGAAGGATTTCAAAGCCCTCATCTATGAGTTCTTGGCTAATGGAAGCTTGGAAGAGTGGCTCCACCGCTCAACTGAA AGAATAGAAGAGCCTACTAGAAAGTTAAATTTCATCGAGAGGGTCAATGTTGCGATTGATATAGCTTCTGGAGTAGATTATCTTCACGATAATTGTGGAA CTCCTATTGTTCATTGTGATCTCAAACCAAGCAATATACTTCTTGACGAAGATATGGTGGCTCATATTGGTGATTTTGGATTGGCAAGAATCCTTTCCGA AAATACAAATCCTTGTTCAAGCTCTATTTTTATAAAGGGAACAGTTGGATATGCAGCTCCAGAATATGGAATGGGAAATGCAGTTTCGTTACAAGGTGAT GTATACAGTTACGGTATCATATTGTTTGAGATGTTTACGGGACAAAGACCTGTAGATGAAACTTTCAAAGAAGGCTTAAGCCTCCACAACACTGTCCAAA TCGCTTTGTCAAATCAACAAACAATAGAAGTTGTGGATCCTATTCTACTCAATGAGCTACTTCATATGCCGGCAACCCATCGCAGTCGTTCTAGTAGCAG CTCAGAGGAAGCAAAAAAAGGTCTAGAGGAATTACTGACTTCCATTCTTGAAATCGGAATTGCATGTTGTTCCGACAACCCAGAAAAGCGAGTTAGTATG AGCGAAGTTTTGTCAAAGCTTACCGCTATAAAAAACAAGCTATGTGTTGTTGGAAGGAGGTGA
AA sequence Show only first row Show all	>Lus10030845 pacid=23155370 polypeptide=Lus10030845 locus=Lus10030845.g ID=Lus10030845.BGIv1.0 annot-version=v1.0 MGSRNLSVNVVVAAALIQLLCCYSSSFGSNETDRLALLSFKSMITDDPLGALSSWNDSTHFCRWYGVSCSRRHFDKVAAVRLPIAELSGSISPHIGNLSF LKVLNLSNNMFVGGIPHEIGRLRRLQHLALYNNSFGGEIPINISRCSALTLLRVDKNKLVGGLPWQLGRLNKLQKFSVSSNNLSGSIPPSFGNLSSLQVL HAYENQMSGRLPDALGQLKSLQYLDLAFNKLSGEIPASIFNISSLVDMWFGDNQFNGSLPWDLGISLPNLEVFDVEDNYITGSLPPSLSNASTLVTLQVS TNKFTGSVPSMKSSNKLLSYLIYYNSLGSGKAGELGFMSSLTNATSLEYLDIGGNNFGGTLPKHMANLSTNMKFLVFSENKISGNIPQDIQRFVNLEMLA GYNNLLSGTIPHSIGNLHSLKNMYLLNNHLSGCIPSSIGNLTELIDVRISNNNLQGEIHASIGNCQELLMLDLGDNNLSGAIPPQLLSLASLSKNLNLSN NKFSGSIPMEVGSLKNLGSLDLSHNILSGNIPSSLGGCASLELLRLQGNLLQGTIPESLSSLKGLRVLDLSSNNLTGQIPNFLEHMDISQSLNLSYNNFE GEVPDQGVFRNTSIVSVIGNAKLCGGMDELKFPLCYFTKPSKKTFNRKWKVVIATICGLGFLALMTSCLFIFWKRSKKVSVPANALQLPLPYKRLYTATN GFSSTNLIGVGSFGSVYKGVLNENGIDTNIAVKVFNLERHGASKSFMAECEALKNIKHRNLVRIMTVCSSVDHEGKDFKALIYEFLANGSLEEWLHRSTE RIEEPTRKLNFIERVNVAIDIASGVDYLHDNCGTPIVHCDLKPSNILLDEDMVAHIGDFGLARILSENTNPCSSSIFIKGTVGYAAPEYGMGNAVSLQGD VYSYGIILFEMFTGQRPVDETFKEGLSLHNTVQIALSNQQTIEVVDPILLNELLHMPATHRSRSSSSSEEAKKGLEELLTSILEIGIACCSDNPEKRVSM SEVLSKLTAIKNKLCVVGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	2.4	0.9554
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	3.9	0.9418
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	5.1	0.9443
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	6.6	0.9360
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	7.7	0.9277
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	8.1	0.9326
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	9.4	0.9232
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	9.9	0.9238
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10035911 [exp]	10.1	0.7831
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	10.5	0.9174

Compare expression of checked genes

Lus10030845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.