Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 677 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 655 / 0 EFR EF-TU receptor (.1) AT3G47110 641 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 640 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 637 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 461 / 6e-144 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 400 / 1e-121 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 399 / 4e-121 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 394 / 3e-120 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G33170 395 / 2e-119 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 1517 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 1333 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1142 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1131 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1125 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1124 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1121 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1097 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1095 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 860 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 857 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 845 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 831 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 819 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 818 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 816 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 806 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 803 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 790 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030846 pacid=23155365 polypeptide=Lus10030846 locus=Lus10030846.g ID=Lus10030846.BGIv1.0 annot-version=v1.0 ATGGGTTCCAGAAATTTGAGTGCTAACGTTGTGGTTGCAGCAACACTTGTCCAGTTGTTGTGCTTCTGCTGCTGTTATTGTTCCTCATTTGGAAGTAACG AGACAGATCGTCTGGCTCTATTAAGTTTCAAATCCATGATTACCAATGACCCTTTGGGTGCATTGAGCTCATGGAACGATTCCACCCACTTTTGCAGTTG GTATGGCGTGTCTTGTTGCAAAAGGCACTATGGTAAAGTCTCTGCCCTGCTTCTGCCAGATCAGGAACTTTATGGTTCTATCTCGCCGCACATTGGTAAC CTCAGCTTCCTGAAGCGGCTCCGTCTCTCCAGCAATATGTTCATTGGGGGGATCCCTCATGAAATCGGCAGCCTTCGTAGATTGCAAATGTTGGGGCTTG ACAACAACTCACTTAGCGGTGAAATCCCACCCAACATCTCGAAATGCTCTGCTCTTACTCTTTTTACGGTATATCAAAACAAGCTGACGGGTGGGCTACC ATGGCAGCTTGGCCTGTTGAACAAACTTGAATATTTTTTTGTATATTCAAACAACCTCACTGGCAGCATCCCTCCTTCTTTCGGTAACTTATCATCTCTT CTATTTCTCCATGCTACTAAAAACCAAATGAGTGGGAGACTTCCTGATGCTCTAGGCCAATTGAAAAGTCTCAAAGTTCTAGCTCTCGGTCAAAATAATT TATTTGGTGAAATCCCTGCTTCCATTTTCAATATTTCTTCTCTCGTAGATATATCGTTTGGAGACAACCAATTCAATGGCAGTCTTCCTTGGAACCTTGG AATTTCACTTCCAAATCTGACAACATTTGATGTGTATAATAACCATTTCACTGGTAGTCTTGTAGATATGTCGTTTGGAGACAACCAATGCAATGGCAGT CTTCCTTGGAACCTTGGAATTTCACTTCCAAATCTGACAACATTTGATGTGTATAATAACCATTTCACTGGTAGTCTTCCACCTTCCTTATCCAATGCCT CTAATTTGGTTATCCTACAACCTGGCATCAACAATTTTACTGGAAGCGTTCCTAGTATGCAAAACTCTAACAAGCTTCGCTACTATCTGATCCCATTCAA CTCTCTAGGGAGCGGGACAGCTGGTGACTTAGATTTCCTCTCTTCTTTGACTAATGCTACGAGTTTGGTATTCCTGGAAATCGGCGTCAACAATTTTGGA GGCAGCTTACCAAAGCATATAGGCAATTTGTCAACCAGCCTGAAGATTTTAGCCTTCAGTCAAACTAAAATATCAGGAAACATTCCAAGCGAGATACAAC ACCTTGTCAACTTGGAGGTGCTCGGGGCACAAACCAATCTCTTGTCAGGTACAATCCCACCTAGCATCGGGAACTTACACTCTCTAAAGAAGTTGTATTT GTTTGACAACCATCTTTCAGGGTGTATTCCATCCTCTATAGGAAACCTGACACAACTTATGGACGTGCGTATGAGCAATAACTATTTACAGGGAGAAATT CCCGAGTCTATTGAGAACTGTCAAGAATTATTAACCCTACTCCTTAGTAACAACAATCTTAGTGGTGCAATTCCGCCACAAATCTTGAGCCTTACTTCCT TGTCACAATATCTGGACTTGGCAAACAATAAATTCAGCGGTTCCATTCCCATGGAGGTCGGGAGCCTGAGAAACTTGGGGTCAATCGATCTATCTCATAA TCTATTGTCAGGCAGCATTCCAAGTAGCATGAGTAGTTGTCTGAGCCTAGAGTCTTTACAGTTGCAGGGAAATCTCCTACAAGGTACTATTCCAGAATCA TTGAGTTCGTTGAGAGGTCTTCGAGTATTGGATCTATCTGCCAATAACTTAACAGGTCAAATTCCTAACTTCTTGGAGCACATGGATATCTCGCAATCTC TGAACTTATCTTATAACAACTTCGAGGGTGAAGTGCCTGATCAAGGAGTCTTCAGAAATACTAGCATTGTCTCTATAATTGGGAATCACAAGCTTTGCGG CGGAATGGATGAACTAAAGTTTCCTCCATGTTACTTGATCACCAAACCGTCAAAAATGACGTTCAACCATAAATGGAAGGTTGTAATATCAACAATCTCT GGTCTAGGTTTCCTAGCCTTAATGACATCTTGCTTGTTTATCTTTTGGAAAAGAGGCAAACGAGTTTCAGTTCCGGCCAATGCCCGGCAACTACCACTGC CATACCAAAGGCTCTACACGGCTACAAATGGATTCTCATCAACGAATCTGATTGGTGTGGGTAGCTTTGGCTCTGTGTATAAGGGAGTCCTTAATGAGGA TGGGATTGATACTAATATTGCGGTGAAAGTATTCAACCTTGAGCGACATGGCGCTTCCAAGAGTTTTGTAGCAGAATGTGAAGCATTGAAGAATATCAGA CACAGAAACATTATAAAGATAATTACGGTGTGTTCAAGTGTTGATCATGAAGGGAAGGATTTCAAAGCTCTCATCTATGAGTTCTTGGCCAATGGAAGCC TGGAAGAGTGGCTCCACCGCTCAATTGAAAGAATCGAAGTAGACACTACAAGAAAGTTAAATTTCATTGAGAGGGTCAATCTTGCAATCGATATAGCTTC CGGAGTGAATTATCTTCACAATAATTGTGGAACTCCTATTGCTCATTGTGATATCAAACCGAGCAATATACTTCTTGATGAAGATATGGTGGCTCATATT GGTGATTTTGGATTGGCAAGAATCCTTTCTGAAAATGCGCATCCTTGTTCAAGCTCTATTTTCATAAAGGGAACAGTTGGTTATGCAGCTCCAGAATATG GAATGGGAAATGAAGTTTCACTACAAGGTGATGTGTATAGCTACGGTATCCTATTACTTGAAATGTTTACTGGACTAAGACCAGTAGAAGAAATTTTCAA AGAAGGCTTAAACCTTCATAACATCGTCCAAAGCGCTCTGTCAAACCAACAAATAATAGAAATTGTGGATTCTGTTTTACTCAATGAACTACTTAGTACG CCGACATCCCACCGCAATCGTCCTAGTACCAGCTCAGAGGAAGCAAAAAAGGGTCTAGAGGAATTACTGACTTCCATTCTTAAAATCGGTATCGCATGTT CTTCCGACAACTCAGAAGAGCGAGTTAATATGAGCGAAGTTTTATCAAAACTTACCGCAATAAAAAAAAAGCTATGCGTTGTTGCAAGGAGCTGA
AA sequence Show only first row Show all	>Lus10030846 pacid=23155365 polypeptide=Lus10030846 locus=Lus10030846.g ID=Lus10030846.BGIv1.0 annot-version=v1.0 MGSRNLSANVVVAATLVQLLCFCCCYCSSFGSNETDRLALLSFKSMITNDPLGALSSWNDSTHFCSWYGVSCCKRHYGKVSALLLPDQELYGSISPHIGN LSFLKRLRLSSNMFIGGIPHEIGSLRRLQMLGLDNNSLSGEIPPNISKCSALTLFTVYQNKLTGGLPWQLGLLNKLEYFFVYSNNLTGSIPPSFGNLSSL LFLHATKNQMSGRLPDALGQLKSLKVLALGQNNLFGEIPASIFNISSLVDISFGDNQFNGSLPWNLGISLPNLTTFDVYNNHFTGSLVDMSFGDNQCNGS LPWNLGISLPNLTTFDVYNNHFTGSLPPSLSNASNLVILQPGINNFTGSVPSMQNSNKLRYYLIPFNSLGSGTAGDLDFLSSLTNATSLVFLEIGVNNFG GSLPKHIGNLSTSLKILAFSQTKISGNIPSEIQHLVNLEVLGAQTNLLSGTIPPSIGNLHSLKKLYLFDNHLSGCIPSSIGNLTQLMDVRMSNNYLQGEI PESIENCQELLTLLLSNNNLSGAIPPQILSLTSLSQYLDLANNKFSGSIPMEVGSLRNLGSIDLSHNLLSGSIPSSMSSCLSLESLQLQGNLLQGTIPES LSSLRGLRVLDLSANNLTGQIPNFLEHMDISQSLNLSYNNFEGEVPDQGVFRNTSIVSIIGNHKLCGGMDELKFPPCYLITKPSKMTFNHKWKVVISTIS GLGFLALMTSCLFIFWKRGKRVSVPANARQLPLPYQRLYTATNGFSSTNLIGVGSFGSVYKGVLNEDGIDTNIAVKVFNLERHGASKSFVAECEALKNIR HRNIIKIITVCSSVDHEGKDFKALIYEFLANGSLEEWLHRSIERIEVDTTRKLNFIERVNLAIDIASGVNYLHNNCGTPIAHCDIKPSNILLDEDMVAHI GDFGLARILSENAHPCSSSIFIKGTVGYAAPEYGMGNEVSLQGDVYSYGILLLEMFTGLRPVEEIFKEGLNLHNIVQSALSNQQIIEIVDSVLLNELLST PTSHRNRPSTSSEEAKKGLEELLTSILKIGIACSSDNSEERVNMSEVLSKLTAIKKKLCVVARS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030846 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029186 [exp]	1.0	0.8435
AT3G47570			Leucine-rich repeat protein ki...		Lus10006445 [exp]	4.9	0.8090
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	8.1	0.8236
AT5G38940			RmlC-like cupins superfamily p...		Lus10038441 [exp]	10.7	0.6668
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	11.7	0.8101
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030717 [exp]	11.8	0.7255
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	16.4	0.7914
AT5G06850			C2 calcium/lipid-binding plant...		Lus10021030 [exp]	19.1	0.7936
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	21.0	0.7808
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	22.3	0.7883

Compare expression of checked genes

Lus10030846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.