Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60070 1229 / 0 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 1212 / 0 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G23940 419 / 4e-138 ARM repeat superfamily protein (.1) AT5G22770 226 / 1e-61 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 225 / 1e-61 Adaptor protein complex AP-2, alpha subunit (.1) AT1G31730 171 / 7e-44 Adaptin family protein (.1) AT1G48760 105 / 4e-23 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030640 [exp] 1521 / 0 AT1G60070 1322 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10012988 [exp] 1376 / 0 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 1373 / 0 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10005371 [exp] 223 / 9e-61 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10020522 [exp] 222 / 2e-60 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 217 / 1e-58 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 214 / 1e-57 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10037271 [exp] 162 / 8e-41 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10035683 [exp] 161 / 1e-40 AT1G31730 1343 / 0.0 Adaptin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092800 [exp] 1307 / 0 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.016G104700 [exp] 1301 / 0 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.009G150300 [exp] 221 / 3e-60 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.004G189700 [exp] 218 / 5e-59 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.004G235200 [exp] 176 / 3e-45 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.012G055000 [exp] 107 / 1e-23 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.015G045600 [exp] 96 / 5e-20 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF02883 [flax] [poplar] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030848 pacid=23155172 polypeptide=Lus10030848 locus=Lus10030848.g ID=Lus10030848.BGIv1.0 annot-version=v1.0 ATGAATCCTTTCTCTTCCGGCACCCGTCTCAGGGACATGATTCGGGCAATTCGTGCTTGTAAAACTGCTGCAGAGGAGCGTGGTGTTGTGAGGAAAGAGT GTGCTGCTATTCGAGCTTCGATTAATGAAAATGATCCAGACTATAGACATCGTAACCTGGCAAAGCTCATGTTTATTCACATGCTTGGCTACCCAACACA CTTTGGGCAAATGGAGTGCCTTAAGTTGATTGCATCACCAGGGTTTCCAGAGAAGAGAATTGGGTATCTTGGTCTGATGCTGCTTCTTGATGAAAGACAG GAAGTCCTAATGCTGGTCACAAACTCATTAAAACAAGATCTTAATCACGCGAACCAGTATATTGTGGGACTTGCTCTTTGTGCTTTGGGAAATATTTGCT CAGCAGAAATGGCACGGGATCTTGCGCCAGAAGTAGAAAGATTGCTGCAATTTCGGGATCCAAACATTCGGAAAAAAGCTGCGTTATGCTCCGTAAGGAT TATAAAGAAGGTCCCAGATCTGGCAGAAAATTTCATAAACCCTGTTGCAGCTTTACTTAAAGAAAAGCATCACGGAGTCTTGATTACAGGAGTTCAACTT TGTACAGATTTATGCAAAGTCAGTCCGGAGGCCCTGGAATATTTTAGGAGGAAATGCACGGATGGTTTAGTTAGGACATTAAGAGATCTTGTGAACAGCC CATATGCACCAGAATATGACGTTGCTGGAATCACAGACCCCTTTCTACATATTAGACTGCTAAGGCTCTTGCGTGTTCTAGGCCACGGAGATGCAGATGC CAGTGATGCTATGAACGACATACTTGCTCAGGTGGCAACAAAGACAGAGTCAAACAAAAATGCTGGAAATGCCATTCTCTATGAATGTGTTGAAACCATC ATGAGCATTGAAGATAATGGTGGCTTGCGAGTGCTTGCTATTAATATCTTAGGAAGATTTTTGTCAAATCGTGACAACAATATCAGATATGTTGCTTTAA ACATGCTGATGAGGGCTATTACTGTAGATGCTCAAGCAGTACAGAGGCACCGTGCAACCATTTTAGAGTGTGTAAAGGATTCAGATGCATCAATTAGGAA AAGAGCCCTCGAATTGGTGTACCTCCTGGTGAATGAGAGCAACGCGGGGAACTTTGTAAAAGATGACGTATGGCATGCTCTAGTTGTCGTGATCGGCAAT GCTTCAGACCTCCATGGATATACAGTGAGGGCGTTGTATAGAGCATTCCAGACATCATCAGAACAGGAAACCCTTGTCCGGGTGGCAGTTTGGTGCATAG GAGAATACGGGGACTTGTTGGTGACTAATGCCGGAATGCTTAACGTAGAAGAACCTATTACAGTTACCGAGTCTGATGCTGTTGATGTGATTGAGAGTGC AATGATGCGGCATGCCTCTGATATGACAACTAAAGCAATGTCATTGGTTGCTCTATTGAAACTATCCTCACGTTTTCCATCTTGTTCAGGGAGGATCAAA GATACCGTTGTCCAACACAAAGGAAGCCTTGTGCTTGAGATGCAACAGAGATCCCTTGAGTTCAACTCTATAATTGAAAAGCACCATAATATTAGGGCTG CTCTGGTTGAGCGGATGCCAGTTCTCGATGAAGCTACCTTTGGTGGAAGAAGAGCTAGTTCCTTACCAGATACTGTTTCAACTTCTGGCGGGTCTGCAGT GAAACTTCCAAATGGAGTTGCAAAGCCCTCTGCAGCTCCTCTCGTTGATCTGCTTGATCTTTCCGATGATCTACCTGCTCCTAGTTCTTCTGGCAATGAT TTTCTTCAGGATCTCCTTGGGGTTGATTTAGCACCTGCGACACAATCAGGTACAAGTCAGGTGCCGAAGGCTGGAACAGATGTTTTATTAGATCTACTGT CTATTGGATCGACTACTGGACAAGAAAACAACTTATCGACACTGGATATCATATCTTCTGCTGAAGATAATAAACCTGCAGTTGCTTCATTAGATGTCCT AGCAGCACCTCCCCTTGCTCACTCCGCTTCTTCTTCGACAGCTTCACATATGATGGATTTGTTGGATGGCTTTGGTCCAGCTGCACCAAAACCTGCGAGC AACGGTCCAGCTTATCCACCTATAGTCGCGTTTGAGAGCAGCACATTGCGGTTAACATTCGAGTTCTTGAAGCAACCTGGGAATCCCCAAATGACATCGA TTTCTGCCACTTTCACAAATTTGTCGCCCAACCTCTTATCAGACTTTGTTTTCCAGGCTGCAGTTCCAAAGTTTCTGCAACTCAGCTTGGATCCAGCTAG TGGTAACAGCCTACCTGCTAGTGGTAATGGAACCATCACGCAGAATTTGAAAGTAACAAACAACCAACATGGAAAGAAATCGCTCGTGATGCGTATAAGG ATATCATACAAGAACGGAGGCAAAGATGTGTTGGAGGAAGGGCAAATCAGCAATTTCCCTCGCGATTTGTGA
AA sequence Show only first row Show all	>Lus10030848 pacid=23155172 polypeptide=Lus10030848 locus=Lus10030848.g ID=Lus10030848.BGIv1.0 annot-version=v1.0 MNPFSSGTRLRDMIRAIRACKTAAEERGVVRKECAAIRASINENDPDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQ EVLMLVTNSLKQDLNHANQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSVRIIKKVPDLAENFINPVAALLKEKHHGVLITGVQL CTDLCKVSPEALEYFRRKCTDGLVRTLRDLVNSPYAPEYDVAGITDPFLHIRLLRLLRVLGHGDADASDAMNDILAQVATKTESNKNAGNAILYECVETI MSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDAQAVQRHRATILECVKDSDASIRKRALELVYLLVNESNAGNFVKDDVWHALVVVIGN ASDLHGYTVRALYRAFQTSSEQETLVRVAVWCIGEYGDLLVTNAGMLNVEEPITVTESDAVDVIESAMMRHASDMTTKAMSLVALLKLSSRFPSCSGRIK DTVVQHKGSLVLEMQQRSLEFNSIIEKHHNIRAALVERMPVLDEATFGGRRASSLPDTVSTSGGSAVKLPNGVAKPSAAPLVDLLDLSDDLPAPSSSGND FLQDLLGVDLAPATQSGTSQVPKAGTDVLLDLLSIGSTTGQENNLSTLDIISSAEDNKPAVASLDVLAAPPLAHSASSSTASHMMDLLDGFGPAAPKPAS NGPAYPPIVAFESSTLRLTFEFLKQPGNPQMTSISATFTNLSPNLLSDFVFQAAVPKFLQLSLDPASGNSLPASGNGTITQNLKVTNNQHGKKSLVMRIR ISYKNGGKDVLEEGQISNFPRDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	0	1
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	1.0	0.9504
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	2.8	0.9353
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	3.5	0.9426
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	6.2	0.9270
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	6.9	0.9319
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	8.1	0.9481
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	8.7	0.9209
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	9.1	0.9126
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	9.9	0.9326
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	10.7	0.9329

Compare expression of checked genes

Lus10030848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.