Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23890 260 / 1e-83 NHL domain-containing protein (.1.2) AT3G14860 144 / 2e-38 NHL domain-containing protein (.1.2) AT1G23880 140 / 6e-37 NHL domain-containing protein (.1) AT1G70280 137 / 3e-36 NHL domain-containing protein (.1.2) AT5G14890 138 / 2e-35 NHL domain-containing protein (.1) AT1G56500 47 / 2e-05 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030639 [exp] 548 / 0 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2) Lus10032158 [exp] 142 / 8e-38 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10014529 [exp] 138 / 2e-36 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10039484 [exp] 135 / 7e-35 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10029176 [exp] 132 / 9e-34 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10012989 [exp] 130 / 4e-33 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10039421 [exp] 124 / 2e-32 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10030850 [exp] 118 / 8e-29 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10030637 [exp] 60 / 9e-10 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129500 [exp] 281 / 9e-92 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 281 / 1e-91 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 144 / 2e-38 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 141 / 2e-37 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 139 / 1e-36 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 138 / 8e-36 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 134 / 1e-34 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.013G007800 [exp] 42 / 0.0006 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01436 [flax] [poplar] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Lus10030849 pacid=23155330 polypeptide=Lus10030849 locus=Lus10030849.g ID=Lus10030849.BGIv1.0 annot-version=v1.0 ATGGCCGCTACTATCTCGCTCTTCGTCGTTTCCCTAGCTGTAACTATCGCTTCCCTCTCGTCGTCGTCTAAAGCCGGCCTCGTACTGGAAGATGGGTACA CAGTAACCACCGTGATCGACGGCCACAAGCTCAACATAAACCCTTATCTCCTCCACCCTCTTCGAGACTCCTCCGATCTCGTCGTCCTCAACTATGCCAC CGGCGTCTTCTACACGGCCGCTTTCCCAGCTTCACCCAGTGAGGAGATTGCGCTGAAACCGTTGGCCGGAGACGGAAAGGTTGGGTTCTCCGATGGGAAG TTGGATTCTGCTCAGTTTAACAAGCCGAAGAACTTTGCAATTGATCTGAAAGGGAATGTTTACGTTGCTGATAAAGGCAACCACGCGATCAGAAAGATAA GCAGCTCAGGGGTGACCACGATCGCTGGTGGATCATCAAACAAAGTGGGCAAGGATGATGGCCCTGCCCAGAATGCAACTTTCTCCAGCGATTTCGAGCT AGTTTTCGTGGCTACGCAGTGTGCATTGCTGGTTGCTGATCATGGAAACCAGTTGGTTCGTCGAATTGCTCTCAAGTCTGAAGATTGCTTCACAGAGCCT CCAGCATCACCTGGGTTAGGAGATGCCCCATGGTGGATTCTTGGACTGGTACTTGCATGCGTATCCGGCATTGCTGTTGGGCTGTTGATTCGCCCTTATG TCATCCCGAGTCAAAGTGAACAACCGAACAACCGCTTTTGGCTCCGCAAGACTTGGAAACTTTCGGTAATCAAGCTGGTGAAAGAAGCTCGGACTCTATG CTTCGTCATCAGAAGCGGAGTTGCTAGTTTACCTCCTCTCTACACGCTCGTTAGACAGCTCATACTGATGAGCATGTCTCTTGTTTCGCTAATGTTTAGG ATTAACCCTCTAGGCTCTCAATCTCCCGCCCCGAGAAAGGATGTCTCTCCGATTGATTCGGATATTGACCTGCTATCACCATACCCGGACGTGACGGATT CGGATATCGACCTGCTATCACCAAACCCGGACGTGATGGTTTCTTCTTCAGACGGTCGTGGAAGGATAGACAGGATGATTGAAGCTAACGTTGCGGAATT TTCTTTCACGGGTAAGGAAGCTACTCAGGTTGAAGGGTCTGTGCCTGTGAGTTCGGGTTTGGTTAGGAGGAGATGA
AA sequence Show only first row Show all	>Lus10030849 pacid=23155330 polypeptide=Lus10030849 locus=Lus10030849.g ID=Lus10030849.BGIv1.0 annot-version=v1.0 MAATISLFVVSLAVTIASLSSSSKAGLVLEDGYTVTTVIDGHKLNINPYLLHPLRDSSDLVVLNYATGVFYTAAFPASPSEEIALKPLAGDGKVGFSDGK LDSAQFNKPKNFAIDLKGNVYVADKGNHAIRKISSSGVTTIAGGSSNKVGKDDGPAQNATFSSDFELVFVATQCALLVADHGNQLVRRIALKSEDCFTEP PASPGLGDAPWWILGLVLACVSGIAVGLLIRPYVIPSQSEQPNNRFWLRKTWKLSVIKLVKEARTLCFVIRSGVASLPPLYTLVRQLILMSMSLVSLMFR INPLGSQSPAPRKDVSPIDSDIDLLSPYPDVTDSDIDLLSPNPDVMVSSSDGRGRIDRMIEANVAEFSFTGKEATQVEGSVPVSSGLVRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23890			NHL domain-containing protein ...		Lus10030849 [exp]	0	1
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	2.6	0.7791
AT2G28105			unknown protein		Lus10021424 [exp]	5.7	0.7730
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	9.2	0.7713
AT1G73450			Protein kinase superfamily pro...		Lus10031328 [exp]	9.4	0.7518
AT2G25409			unknown protein		Lus10010124 [exp]	11.8	0.6032
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	15.3	0.7485
AT1G16860			Ubiquitin-specific protease fa...		Lus10005996 [exp]	19.0	0.6583
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	20.9	0.7022
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10019873 [exp]	21.7	0.7299
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10040422 [exp]	24.4	0.6714

Compare expression of checked genes

Lus10030849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.