Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70280 446 / 3e-151 NHL domain-containing protein (.1.2) AT1G23880 435 / 1e-146 NHL domain-containing protein (.1) AT5G14890 293 / 2e-89 NHL domain-containing protein (.1) AT3G14860 215 / 1e-62 NHL domain-containing protein (.1.2) AT1G23890 134 / 2e-35 NHL domain-containing protein (.1.2) AT4G20270 82 / 4e-16 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25910 80 / 2e-15 AtRLP52 receptor like protein 52 (.1) AT1G73080 80 / 3e-15 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT3G24240 79 / 6e-15 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G08850 78 / 1e-14 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029176 [exp] 614 / 0 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10012989 [exp] 579 / 0 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10039484 [exp] 329 / 1e-105 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10030637 [exp] 315 / 4e-102 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10039421 [exp] 281 / 2e-90 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10014529 [exp] 283 / 1e-88 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10032158 [exp] 282 / 1e-88 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10030638 [exp] 172 / 7e-45 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 124 / 2e-29 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094200 [exp] 535 / 0 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 533 / 0 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 410 / 1e-137 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 233 / 2e-69 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 217 / 1e-62 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 127 / 1e-31 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 119 / 4e-29 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.005G080000 [exp] 99 / 4e-21 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 96 / 3e-20 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 92 / 3e-19 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01436 [flax] [poplar] NHL NHL repeat CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10030850 pacid=23155254 polypeptide=Lus10030850 locus=Lus10030850.g ID=Lus10030850.BGIv1.0 annot-version=v1.0 ATGGCTGTAATGGGGAAGTATCTGTTTCTCTTCACCTTCACATTCATCCTCCTCTTTGCTTCCAATGGCGTCTCCTCTGCTCCTCTAGTCTCCCCTGCAA GGATCGTGAGCGGAATTTTCTCGAACACCTTGCCTGCATTCGTGAAATGGGTCTGGTCGCTCAAGGCCTCCACCAAGACAGCAATGTCTGGTCGTCCATT GATGAAGTTTGAGCCTGGTTATACTGTGGAGACAATGTTTGATGGAAGCAAAGCTGGGATTGATCCTTACTCTGTTGACGTTTTGTCCAGTGGGGAGCTT CTGGTTTTGGACTCTGCTAACAGCAATCTTTACAAGATTCCTTCTTCTCTGTCTCTATATACCAAGCCAAAGTTGGTTGCTGGATCTAGTGAAGGGTACT CTGGTTATGTTGATGGGAAGGCTGGTGAGGCTAAGATGAATCATCCAAAGGGAGTAGCTGCAGATGACAGAGGGAATATATATGTTGCAGACACCATGAA CAATGCTATAAGGAAGATAAGGGTCACAACCATTGCTGGAGGAAAGCAAGGAAACGGAGGAGGTAGCGGCCATGTTGATGGAGCAAGCGAAGATGCTAAA TTCTCGAATGATTTCGATGTAGTCTACATGGGAAGCAGCTGTTCCCTCCTTGTGATAGACAGAGGAAACAAAGCCATTAGAGAGATCCAGCTCCACTTTG ATGACTGTGCTTACCAGTATGAAAGTGGCTTCCCTTTTGATTGGTACAACTACTCCATTCGATACGATTGTTTTGCAACAGAGATCGCGCTTCTTCTAGC GGCTGGCTTTGTTGGTTACATGCTGGCTTTCCTCCAACGTAGGATGGGAGCAATGGTTTCTTCACATAGCGATCCTACCATGGCTGAAACTCGAGCTTCG AGACCTTTGAAATCGGTTTTTCCACCATTGATCCCAACTGACGATGAGCAACAACGACAGAAGCAAGAGGAAACCTCGTTTCAATCTCTGTGGAAGTTTT TCGCATCTTTCGTGGAGATCCTTGGAGGGATGGTTCCTGGATTTAGAAAGAATAACTCACCAGCTCCTCTCACCTACCAATCCCAAAACCAGCATCAGAG ATCATACTCAGCTGGCTGGCCAATTCAAGACAGCTACGTTATACCAGAAGACGACGAGCCTCCAACTGTCGAAGCGAGAACCCCTACCCCGAGGAAGAAG AAAACGTACGCTTTCATGTCGAAAGATGCTGATAATAAGATGCAAAGGTGGCGCCAATGTCGCGATGGGGAGACGCCACATCAGCAGCAGCAGGCGAATC AGCAGCCTCCACGCCAGCAGCATCAATCCAGCACCCCTGTGGCGCCGTACACTTACTATGAACAGAGCCACGAGGACACCAATGAGATAGTGTTTGGAGC AGTTCAAGAGATCAATGGGGGTAAGCTGAAACCTTCGGTGATTAAGCCTGTCGACTATGGAGATCCGATGTTCGACCGTTATAATATTCGAGTTCGTTCG AGTTCCGCTCGTTATGGTACAATCCCGTCAAGCATCGGCAATTTGTACTCTCTTGAGCGGTTGTACTTGCATGAAAACGACATTTCAGGATCTATTCCGT TATCTATCGGGAACTTGATGAGATTATACGAGCTGAGTATTAGCAATAATCGTCTAGATGGAGAAATTCCTGCTTCTATTCGGAATTGTCAAAGATTATC GATGTTGGACGTTTCTGACAACAATCTTAGTGGTGCCATCTGCCCCGAAGTTATGAGTCTTGCTTCCTTGTCAATTGCTCTAGACTTGTCCGAAAACAAC TTCACCGGTGCTATCCCGACCGAGGTGTAG
AA sequence Show only first row Show all	>Lus10030850 pacid=23155254 polypeptide=Lus10030850 locus=Lus10030850.g ID=Lus10030850.BGIv1.0 annot-version=v1.0 MAVMGKYLFLFTFTFILLFASNGVSSAPLVSPARIVSGIFSNTLPAFVKWVWSLKASTKTAMSGRPLMKFEPGYTVETMFDGSKAGIDPYSVDVLSSGEL LVLDSANSNLYKIPSSLSLYTKPKLVAGSSEGYSGYVDGKAGEAKMNHPKGVAADDRGNIYVADTMNNAIRKIRVTTIAGGKQGNGGGSGHVDGASEDAK FSNDFDVVYMGSSCSLLVIDRGNKAIREIQLHFDDCAYQYESGFPFDWYNYSIRYDCFATEIALLLAAGFVGYMLAFLQRRMGAMVSSHSDPTMAETRAS RPLKSVFPPLIPTDDEQQRQKQEETSFQSLWKFFASFVEILGGMVPGFRKNNSPAPLTYQSQNQHQRSYSAGWPIQDSYVIPEDDEPPTVEARTPTPRKK KTYAFMSKDADNKMQRWRQCRDGETPHQQQQANQQPPRQQHQSSTPVAPYTYYEQSHEDTNEIVFGAVQEINGGKLKPSVIKPVDYGDPMFDRYNIRVRS SSARYGTIPSSIGNLYSLERLYLHENDISGSIPLSIGNLMRLYELSISNNRLDGEIPASIRNCQRLSMLDVSDNNLSGAICPEVMSLASLSIALDLSENN FTGAIPTEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23880			NHL domain-containing protein ...		Lus10030850 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	1.0	0.9128
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	9.7	0.8220
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	11.9	0.8215
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	12.0	0.7439
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	13.7	0.7764
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10024035 [exp]	14.5	0.7870
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	14.7	0.8147
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	17.7	0.7513
AT3G01810			unknown protein		Lus10022341 [exp]	18.6	0.8008
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	18.7	0.7446

Compare expression of checked genes

Lus10030850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.