Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 749 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 681 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 645 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 640 / 0 EFR EF-TU receptor (.1) AT3G47110 640 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 429 / 6e-133 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 425 / 4e-132 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 422 / 7e-132 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G65700 416 / 9e-130 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G24130 412 / 2e-128 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030636 [exp] 1602 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030847 [exp] 1284 / 0 AT3G47570 746 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1106 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1099 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1092 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1083 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1076 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1066 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1058 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 874 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 847 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 846 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 833 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 827 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 823 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033900 [exp] 820 / 0 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 820 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 817 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 809 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030851 pacid=23155397 polypeptide=Lus10030851 locus=Lus10030851.g ID=Lus10030851.BGIv1.0 annot-version=v1.0 ATGGCATTGCTACACTTCAAGTCCATGATTACGGACGATCCTTTCGGGGCACTGAGTTCGTGGAATGACTCGACCCATTTGTGCCAGTGGTATGGCGTGT CTTGTTCCGATGGTAGGGTCGCTAACTTAAGTCTCACATCTCAAAGACTCTATGGCTCTATCTCGCCTCACATCGGCAACCTCAGCTTCTTGAAGGGGTT GCATCTCTACAACAACAGCTTCGTCCGTGAAATCCCTTCCGAAATCGGAAGACTTGGCATGCTGCAAATGTTGGAGCTTCATAACAACACGCTCGGCGGT GAGATCCCATCCAACATATCGGAATGCTCGGAGCTAACCGTGATACATCTGCAGGACAACAACCTCCAAGGACCACTACCATGGCAGTTTGACCGATTGC AAAAGCTCGAAATTTTGTTTATATATACAAACAATCTAACAGGTCCCATCCCTCCCTCAATCGGCAACTTGTCGTCTCTCCAACTGTTCGCGCCAGTCCA GAACAGCTTCAGTGGCACGATTCCCGAGTCTCTAGGTCGGTTGAAGAGCCTCACGGCGCTGTATCTGAACGTCAACGACTTCTCCGGTGAAATCCCCGCT TCCATTTTCAATCTTTCTTCCCTCACGGACCTGTGGTTCGGAGGGAACTACAAACTCCATGGTGAACTTCCTCCCGACCTAGGGATACTACTTCCGAATC TTGTGAACTTCGACGTGGGTGGGAACCGTTTCAGCGGTCGTGTCCCGCCTTCCATATCCAATATCTCCAACTTGTTTATGCTCCAAATGTCAGAAAACAA TTTTACAGGGAGCATGCCTAGCTTGGCAGCCTGTCCCAAGTTCGCGCGCCTTTTGGTACAGAGTAACTCTCTAGGAACCGGGAAAGCTTCCGATTTGGAC TTCCTGGCATCTTTGGTGAATGCATCGGGTTTGGAAGTAGTGCACATTGAGAAGAACAATTTCGGAGGAATCATACCGGAAAATATTGGCAACTGGTCGA CCAACCTCTTGCAGCTAACCCTTAACGACAACAAAATATCAGGAAACTTTCCAAACGCGATACAATCACTTGTCAACTTGGAGGTGCTTTGGGCAAACGA CAATTACCTGACAGGTACAATCCAATCTAGCTTCGGAAACCTGCGATATCTCCGACGGTGTAATTTGTTCAACAACAGAATTTCGGGGAATATTCCGATG TCTATTGGAAACCTGACGGAATTGATTGAGCTGGATATTAGCGCTAACCGACTGCAGGGAGAGATTCCTGCTTCTATTGGGAATTTGCAGAATTTGTTGT TGTTCAACCTTTCTTACAATGATTTACATGGTGTCATCCCTCTGCAAGTTATGGGTCTTACTTCCTTGTCGCGAGGCCTTGACTTGTCGTATAATCGATT CACCGGTCCGATTCCCTCCGAGGTGGGAAATTTGAGGAATTTGGGTTCGTTGGTTCTGTCTCACAACATGTTGTCTGGTATCATTCCTAGTAGTTTGGGT AGTTGCGTTATGTTGGAGACTCTGAATTTGGGAGAGAATCTCCTACAAGGTTCTATACCTTCTTCTTTGAGTTCGATAAGAGGTATCGAGAAGTTGGATC TTTCTGGCAACAACTTATCGGGTCGGATACCAATTTTTTTGGAGCGCATGAATATCTCCAAGTTATTGAATTTGTCATATAACAATTTCGATGGCGAGAT GCTTGCAGAAGGAGTCTTTAGAAATATCACCATCGTTTCAATCGTCGGAAATAACAAGTTATGTGGGGGAATGGCCGAGTTCAAACTTTCACAATGTAAG AACTTGGTACACAAGTCATTGAGCAGTAAGTGGAAGATTGTTATATCAACAACCTTGAGCCTAATTTTTGTTGCCTTCATGGGCTTCTGCTTCTTGATTT TTTGGATAAAAATGAGAGGAAAACAAGGTGTTGATTCAGTTGATGATATGCAATTACAACAATTGTCTTACCAAACGCTCCTCAAGGCAACCGATGGCTT CTCGTCAGCAAACCTAATTGGTGTAGGCAGCTTTGGCTCCGTATATAAGGGAGTCCTTGAGGAAAACGATTTGACTACCAATGTTGCAGTTAAGGTATTC AACCTTCAACGCCGGGGAGCTTCCAAGAGTTTTATAGCAGAATGTGAAGTTTTGAAGAACATCAAACACATAAATCTTGTCAAGATATTGACTGTGTGTT CAAGTGTCGATCACAAAGGAGATGATTTCAAAGCTCTCATTTATGAGTTTTTGGCTAATGGAAGCTTGGAGGATTGGTTACATCCTCCGGTTGAAAGAAC GGATGAGCCTACAAAGAGCTTGAATTTCCTTCAAAGGATAAATCTTGTCATTGATATAGCTTCCGCAATCGATTATCTTCATAACAATTGTGGAACTCCA ATTGTTCATTGTGATATTAAGCCTAGCAACATACTGCTTGATGAGAATATGAGGGCCAACGTAGGTGATTTTGGGTTGGCAAGATTCATTTCTGCCGTTC CAAATCCCTCAATGAGTTCCATTGGGATTAAAGGAACAGTTGGCTATGCACCTCCAGAATATGGAATGGGAAACGAGGTGTCAATACAAGGTGACATGTA CAGTTTCGGCGTCCTCTTACTTGAGTTGTTTACCGGACGAGGGCAATTGACGAGATTTTCACAGAAGGCTCAAACCTTCATAACAATGTTAGAAATGCGT TATCGAATCAGCAAGCAACAAAAGTTGTGGATCCAATTTTGGTCAACGAACTACGTAGTAGGCTTACAACCCTTCGCAATCATACTAGTGGTAGCACCTT GGAAGAAACAAGCAATGGCCTAG
AA sequence Show only first row Show all	>Lus10030851 pacid=23155397 polypeptide=Lus10030851 locus=Lus10030851.g ID=Lus10030851.BGIv1.0 annot-version=v1.0 MALLHFKSMITDDPFGALSSWNDSTHLCQWYGVSCSDGRVANLSLTSQRLYGSISPHIGNLSFLKGLHLYNNSFVREIPSEIGRLGMLQMLELHNNTLGG EIPSNISECSELTVIHLQDNNLQGPLPWQFDRLQKLEILFIYTNNLTGPIPPSIGNLSSLQLFAPVQNSFSGTIPESLGRLKSLTALYLNVNDFSGEIPA SIFNLSSLTDLWFGGNYKLHGELPPDLGILLPNLVNFDVGGNRFSGRVPPSISNISNLFMLQMSENNFTGSMPSLAACPKFARLLVQSNSLGTGKASDLD FLASLVNASGLEVVHIEKNNFGGIIPENIGNWSTNLLQLTLNDNKISGNFPNAIQSLVNLEVLWANDNYLTGTIQSSFGNLRYLRRCNLFNNRISGNIPM SIGNLTELIELDISANRLQGEIPASIGNLQNLLLFNLSYNDLHGVIPLQVMGLTSLSRGLDLSYNRFTGPIPSEVGNLRNLGSLVLSHNMLSGIIPSSLG SCVMLETLNLGENLLQGSIPSSLSSIRGIEKLDLSGNNLSGRIPIFLERMNISKLLNLSYNNFDGEMLAEGVFRNITIVSIVGNNKLCGGMAEFKLSQCK NLVHKSLSSKWKIVISTTLSLIFVAFMGFCFLIFWIKMRGKQGVDSVDDMQLQQLSYQTLLKATDGFSSANLIGVGSFGSVYKGVLEENDLTTNVAVKVF NLQRRGASKSFIAECEVLKNIKHINLVKILTVCSSVDHKGDDFKALIYEFLANGSLEDWLHPPVERTDEPTKSLNFLQRINLVIDIASAIDYLHNNCGTP IVHCDIKPSNILLDENMRANVGDFGLARFISAVPNPSMSSIGIKGTVGYAPPEYGMGNEVSIQGDMYSFGVLLLELFTGRGQLTRFSQKAQTFITMLEMR YRISKQQKLWIQFWSTNYVVGLQPFAIILVVAPWKKQAMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030851 [exp]	0	1
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10038261 [exp]	1.0	0.9588
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	8.0	0.9205
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	8.7	0.9197
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029019 [exp]	12.4	0.7508
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	13.0	0.9066
					Lus10021782 [exp]	14.5	0.9066
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	15.9	0.9066
AT5G50220			F-box family protein (.1)		Lus10015170 [exp]	17.0	0.9057
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	17.1	0.9066
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	18.3	0.9066

Compare expression of checked genes

Lus10030851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.