Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 346 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 339 / 7e-104 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 335 / 3e-102 EFR EF-TU receptor (.1) AT3G47580 322 / 1e-97 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 319 / 2e-96 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 248 / 8e-71 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 216 / 2e-59 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT3G49670 207 / 1e-56 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 205 / 1e-55 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 205 / 2e-55 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 757 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030846 [exp] 727 / 0 AT3G47570 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 677 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 580 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 559 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 543 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 543 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 541 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 533 / 1e-177 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 434 / 7e-140 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 427 / 3e-137 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 427 / 8e-137 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 422 / 3e-135 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 416 / 4e-133 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 409 / 3e-130 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 408 / 1e-129 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 405 / 8e-129 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 403 / 7e-128 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 400 / 7e-127 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030852 pacid=23155211 polypeptide=Lus10030852 locus=Lus10030852.g ID=Lus10030852.BGIv1.0 annot-version=v1.0 ATGGGTTGTGGAAATTTGAGTGTTATTAACGTTGTGGTTGCAGCAACATTTGTTCAGTTGTTGTGCTTCTGCTGTTGTTATTCTTCCTCCTTTGGAAGTA ATGAGACAGATCGTCTCGCTCTACTCAGTTTCAAGTCCATGATTACCAATGACCCTTTGGGTGCATTGAGCTCATGGAATGATTCCACCCACTTTTGCCG GTGGTATGGCGTGTCTTGTTCCAAAAGGCACTATGGTAAAGTCTCTGCCCTGCTACTGCCAGATCAGGAACTTTATGGTTCTATCTCGCCGCACATTGGT AACCTCAGCTTCCTGAAGCGGCTCCGTCTCTCCAACAATATGTTCGTTGGGGGGATCCCTCATGAAATCGGAAGCCTTCGTAGATTGCAGACGTTGGGGC TTGAAAACAACTCACTTGGCGGTGAAATCCCACCCAACATCTCGAAATGCTCTGCTCTTACTCTTTTTTCGGTATCTCAAAACAAACTGATGGGTGGACT ACCATGGCAGCTTGGCCTGTTGAACAAACTTCAATATCTTTTTGTAAGGTCAAACAACCTCACTGGCAGCATCCCTCCTTCTTTCGGTAGTCTTCCTCCT TTTTTATCCAATGCCTCTAATTTGGTTCGTCTACAACTCCGCATCAACAATTTTACTGGAAGCGTTCCTAGTATGAAAAGCTCTAACAAGCTTCGCTACT ATCTGATTCCATTCAACTCTCTAGGGAGCGGGACAGCTGGTGACTTAGATTTCCTCTCTTCTTTAACTAATGCTACAAGTTTGGAATTCCTGAGTATCGA CGAGAATAATTTTGGAGGCAACTTACCGAAAGATATTGCCAATCTGTCAACCAGCCTGAAGCAGTTAACCTTCAGTCGAAATAAAATATCAGGAAACATT CCAAGCGACATACAACACCTTGTCAACTTGGAGGTGCTCGTGGCAAATGCCAATCTCTTGTCAGGTACAATCCCACCTAGCATCGGGAACTTACACTCTC TGAAGGAATTGTATTTGTTTGACAACCATCTTTCAGGGTGTATTCCATCCTCAATAGGGAACTTGACACAACTTATCCAAGTGAGTCTTAGCAATAACCA TTTACAAGGAGAACTTCCTGGGTCTATTGGGAACTGTCAAGAATTATTAATGCTAGACCTTGGCTACAATAATCTTAGTGGTGCAATCCCACCACAACTC TTGAGCCTCACTTCCTTGTCAACATATCTGGTCTTGGCTAACAATAAATTCAGCGGTTCCATTCCGGCAGAGGTGGGGAGTCTGAAAAACTTGGGGTCAA TCGATCTGTCTCATAATCTATTGTCAGGCAGCATTCCAAGTAGCATGAGTAGTTGTCTGAGCCTAGAGTCTTTACAGCTGCAGGGAAATCTCCTACAAGG TACTATTCCGGAATTATTTAGTTCGTTGAGAGGTCTTCGAGTATTGGATCTCTCTTCCAATAACTTGACAGGTCAAATTCCAAACTTCTTAGAGCACATG GATATCTCGCGATCTTTGAACTTATCTTATAACAACTTCGAGGGTGAAGTGCCTGATCAAGGAGTCTTCAGAAATACTAGCATTGTCTCTATTGTTGGGA ATCACAAGCTTTGTGGGGGGATGGATGAACTACAGTGTCCTCCATGTTACTTCACCAACCAGTCAAAAAAGACGTTCAGCCACAAGTGGAAGGTTGTAAT ATCAACAATCTGTGGTCTAGGTTTCCTTGCCTTAATGACTTCTTGCTTGTTCATCTTTTGGAAAAGAGGCAAACAAGTTTCAGTTCCCGCCAATGCTCTG CAACTACCACTGCCTTATCAAAGGCTCTACACGGCTACAAATGGATTCCCATCAACGAATCTGATTGGAGTGGGTAGCTTTGGCTTCGTGTACAAGGGTG TCCTTAATGAGAATGGGATTGATACAAATATTGCGGTGAAAATATTCAATCTTGGGAGACATGGCGCTTTCAAGAGTTTTATGGCAGAATGTGAAGCGTT GAAGAATATCAGACACTGA
AA sequence Show only first row Show all	>Lus10030852 pacid=23155211 polypeptide=Lus10030852 locus=Lus10030852.g ID=Lus10030852.BGIv1.0 annot-version=v1.0 MGCGNLSVINVVVAATFVQLLCFCCCYSSSFGSNETDRLALLSFKSMITNDPLGALSSWNDSTHFCRWYGVSCSKRHYGKVSALLLPDQELYGSISPHIG NLSFLKRLRLSNNMFVGGIPHEIGSLRRLQTLGLENNSLGGEIPPNISKCSALTLFSVSQNKLMGGLPWQLGLLNKLQYLFVRSNNLTGSIPPSFGSLPP FLSNASNLVRLQLRINNFTGSVPSMKSSNKLRYYLIPFNSLGSGTAGDLDFLSSLTNATSLEFLSIDENNFGGNLPKDIANLSTSLKQLTFSRNKISGNI PSDIQHLVNLEVLVANANLLSGTIPPSIGNLHSLKELYLFDNHLSGCIPSSIGNLTQLIQVSLSNNHLQGELPGSIGNCQELLMLDLGYNNLSGAIPPQL LSLTSLSTYLVLANNKFSGSIPAEVGSLKNLGSIDLSHNLLSGSIPSSMSSCLSLESLQLQGNLLQGTIPELFSSLRGLRVLDLSSNNLTGQIPNFLEHM DISRSLNLSYNNFEGEVPDQGVFRNTSIVSIVGNHKLCGGMDELQCPPCYFTNQSKKTFSHKWKVVISTICGLGFLALMTSCLFIFWKRGKQVSVPANAL QLPLPYQRLYTATNGFPSTNLIGVGSFGFVYKGVLNENGIDTNIAVKIFNLGRHGAFKSFMAECEALKNIRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030852 [exp]	0	1
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	7.2	0.8950
AT3G45070			P-loop containing nucleoside t...		Lus10041611 [exp]	7.3	0.8768
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10021809 [exp]	10.4	0.8917
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	12.0	0.8929
					Lus10013172 [exp]	12.2	0.7829
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10013001 [exp]	12.5	0.8640
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	13.1	0.8349
					Lus10011950 [exp]	13.7	0.8153
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10040940 [exp]	17.2	0.7289
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10042550 [exp]	19.4	0.8769

Compare expression of checked genes

Lus10030852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.